Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04963 ATGGCTTGGGATTGTCAACTCAACAAGCATAGGGGTAACCATGTTGCAGTGGAATTTGACACAAGGAAAAGCCACCCTGAAGATGTTGATGATTACCATGTTGGGGTGGATGTAAAAAGCATCTATTCCATCCAGCAAGAGCCTCTTGGAGCACATGAAGTTAATCTTTCAAGAGGCATTGATGTTATTGCAACAGTTCAGTTTGATGCCAAAGAAGGAAAAATGTCTATTTTTGTTTCTAAACTGCTTCCAGAAGATGTTTATGTGGGATTTTCAGCTTCCACAGGGGTATATACACAAGTTAACACAATAAAATCATGGTATTTCTCAAGCTGGGAGTATATTGAGAAGGATCCAATCAATCTAATATGGCTATGGATCTTGATTCCTATAACTGTGGTTGGAGGGGCATGTGGGCTTGGTGGTTTATATTACTGGAAAAGAATACACAAAAAGGAACAGGGGCAGAAAGAAGATTTGCAGATAGAGCTTGAAATTAAAGGCTCATCTAATGCTCCACATAAATTTCAGCTGAAGGAGCTTCTATCTGCCACCAAGAATTTCAACTCATTAAACAAGCTTGGCAAAGGAGGATTTGGGACAGTTTATAAAGGCAACTTGAATGGCAAAGATGTTGCTGTGAAAAGGATTTCAAAGGATTCAAGTCATGGGAAGCAAGATTTTATAGCTGAAATCACAACCATAGGCAATCTCAATCACAAAAATCTAGTGAAATTAATAGGATGGTGCTATGAAAAGGGTGAGCTACTACTTGTGTATGAGTTCATGCCAAATGGAAGCTTAGATAGATTCATTTTCTCTGGAGGAACCACAACATCTACAGGGGATTCAACTCTGAGTTGGGAAAGGAGGCTTAGTGTTATATGTGGGGTATCTAAAGCACTGGATTATCTTCACAATGGTTGTGATAAAAGAGTGTTGCATAGGGACATAAAAACCAGCAATGTAATGTTGGATTCAGATTTCAATGCTAGACTTGGAGATTTTGGATTAGCTCGTACCATTCATCTTAGTGAAAAAACTCACCACTCAACAAGAGAAATTGCTGGAACACCAGGATATATAGCACCAGAAAGCTTCCACACTCGAAGGGCTTCTGTTGAAACTGATGTCTATGCATTCGGTGTTCTGATGCTAGAAGTTGTCTGTGGAAGAAGAAAGCTTGAACACAAACAGTATCTGAATAATTATAATAATAGCATTATGGATTGGGTTTGGGAGCTTCATAGTGAAGAAAGCATAACAGATTCTGTAGATTTGAGACTGAATGGTGATTTTAATAAGGTTCAAGCTAGGTGTGTGCTTGAGTTGGGGTTAGCTTGTTGCCATCCCAACCCATATGAGTGGCCATCCATGAGAACTGTCATGCAGGTGCTACAAGGGGAAACAGCTCCACCATTTGTACCTGTTGAGAAACCTGCTTTTACATGGCCAGCAATGGCTCCTGTCCTCAAAGAAGAGTTAAATTCACATACTATTGGATCCCAAAATGAACCAATAACAGAACTGATTAGTGGGAGATGCTGTGTCTCCAAAAGTAATTAG 1566 0.3966 MAWDCQLNKHRGNHVAVEFDTRKSHPEDVDDYHVGVDVKSIYSIQQEPLGAHEVNLSRGIDVIATVQFDAKEGKMSIFVSKLLPEDVYVGFSASTGVYTQVNTIKSWYFSSWEYIEKDPINLIWLWILIPITVVGGACGLGGLYYWKRIHKKEQGQKEDLQIELEIKGSSNAPHKFQLKELLSATKNFNSLNKLGKGGFGTVYKGNLNGKDVAVKRISKDSSHGKQDFIAEITTIGNLNHKNLVKLIGWCYEKGELLLVYEFMPNGSLDRFIFSGGTTTSTGDSTLSWERRLSVICGVSKALDYLHNGCDKRVLHRDIKTSNVMLDSDFNARLGDFGLARTIHLSEKTHHSTREIAGTPGYIAPESFHTRRASVETDVYAFGVLMLEVVCGRRKLEHKQYLNNYNNSIMDWVWELHSEESITDSVDLRLNGDFNKVQARCVLELGLACCHPNPYEWPSMRTVMQVLQGETAPPFVPVEKPAFTWPAMAPVLKEELNSHTIGSQNEPITELISGRCCVSKSN. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04963 521 FunFam probable L-type lectin-domain containing receptor kinase S.5 263 472 - -
Seca8g04963 521 ProSiteProfiles Protein kinase domain profile. 188 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04963 521 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 210 IPR013320 -
Seca8g04963 521 PANTHER - 13 476 - -
Seca8g04963 521 SMART serkin_6 188 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04963 521 Gene3D Transferase(Phosphotransferase) domain 1 263 472 - -
Seca8g04963 521 Gene3D Phosphorylase Kinase; domain 1 172 262 - -
Seca8g04963 521 ProSitePatterns Protein kinases ATP-binding region signature. 194 215 IPR017441 GO:0005524
Seca8g04963 521 SUPERFAMILY Protein kinase-like (PK-like) 170 466 IPR011009 -
Seca8g04963 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Seca8g04963 521 Pfam Protein kinase domain 189 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04963 521 Gene3D - 4 119 - -
Seca8g04963 521 CDD STKc_IRAK 194 468 - -
Seca8g04963 521 Pfam Legume lectin domain 10 113 IPR001220 GO:0030246
Seca8g04963 521 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 161 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04963 Seca-Chr8 137710129 137711694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04963 11 484 Receptor kinase-like Gene Family AT5G55830 38.041 4.50e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca8g04963 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04963 - - tcc:108661882 638.647