Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04948 ATGTACCAAGTTTTTCAGAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCATTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGCTGCACCTCCATCTAGAAATGTTGCCGCACCACCACCAGTCCCTAATGGGTCTGCACCAGCTGCTGCTAAAACCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCTATTGATGATCATCGTCCTATGCGACCTACAACAGCTGGTCATATGCCTGCTCGAATCGAGGCTCCTCCCGGTCCAGCTGCTAGCTTTGGTGCTAGTTCCACAGCGAAGATTAGTGTAGAAGCTTCCTTGGCTGGAGCTATCATTGGAAAGGGGGGTGTAAACTCAAAGCAGATCTGTCGGCAAACAGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGAAATATTGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAAGAGTTACTTCTGACTGTGTCAATGTCTGCCCCGCCTAAATCCACCCCAGGTGTTCCTGGTGCCCCAGCCCCAGCAGGTAGCAACTTCAAGACAAAGCTGTGTGACAATTTTGCAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAGTTGCGCAAGATAGGAATCTGA 771 0.4708 MYQVFQSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLKPAAPPSRNVAAPPPVPNGSAPAAAKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPMRPTTAGHMPARIEAPPGPAASFGASSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKELLLTVSMSAPPKSTPGVPGAPAPAGSNFKTKLCDNFAKGSCTFGERCHFAHGAAELRKIGI. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04948 256 Gene3D - 221 253 - -
Seca8g04948 256 Gene3D - 56 92 - -
Seca8g04948 256 CDD KH-I_AtC3H36_like 132 197 - -
Seca8g04948 256 SMART c3hfinal6 222 248 IPR000571 GO:0046872
Seca8g04948 256 SMART c3hfinal6 60 87 IPR000571 GO:0046872
Seca8g04948 256 Pfam KH domain 132 195 IPR004088 GO:0003723
Seca8g04948 256 SUPERFAMILY CCCH zinc finger 60 91 IPR036855 GO:0046872
Seca8g04948 256 Pfam RNA-binding, Nab2-type zinc finger 11 21 - -
Seca8g04948 256 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 103 IPR045877 GO:0003729
Seca8g04948 256 FunFam Zinc finger CCCH domain-containing protein 55 92 - -
Seca8g04948 256 SUPERFAMILY CCCH zinc finger 222 252 IPR036855 GO:0046872
Seca8g04948 256 ProSiteProfiles Zinc finger C3H1-type profile. 60 88 IPR000571 GO:0046872
Seca8g04948 256 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Seca8g04948 256 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 247 IPR000571 GO:0046872
Seca8g04948 256 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 87 IPR000571 GO:0046872
Seca8g04948 256 FunFam Zinc finger CCCH domain-containing protein 217 253 - -
Seca8g04948 256 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 119 199 IPR036612 GO:0003723
Seca8g04948 256 ProSiteProfiles Type-1 KH domain profile. 129 193 - -
Seca8g04948 256 SMART kh_6 128 198 IPR004087 GO:0003676
Seca8g04948 256 Gene3D K Homology domain, type 1 125 220 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04948 Seca-Chr8 137002432 137009189 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g04948 KH_1 2.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04948 - - pvu:PHAVU_007G259300g 451.825