Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04946 ATGTATGAGAAAAAGCTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATAATGACTATAGCATTGCTTGCGCATCTTGCTTGTGAGAAGGGGATTTGGGGCCCACATCTAATCGTGGTACCCACTAGTGTAATGCTCAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAACTTCAATTCGAAACGACGGATTCTCTTGACTGGTACACCACTACAAAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAATCGCACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCCTTCTTACTTCGCCGATTAAAGCGAGATGTGGAAAAGCAACTCCCAATGAAACATGAGCATGTCATATACTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTGTTGATATTCAGTTAAGCTCTTCTGTTTGCTCAATGCTTTTGCCTAGCTCCTTTTCAACTGTCGACCTAAGAGGTTTAGGTCTTATATTTACTCATCTTGACCATAGCATGACTTCTTGGGAGAATGATGAAGTGCAAGCTATTGAGACCCCTGCAACTTTAATCATGGAACGCACTGATATGGCTGACCTAGATGTAATTAGGCCTGGACTGAAATGTCAGAAAAAGGTGCAGGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATTTGGGAAGAGAGGCTAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCTACAACTCTGAGGGACCTTGTTACAATGAGGCATCCTGTATATGATATTCATCAGATGAAGGCGAACCCTGTTTCATACATGTACTCATCAAAGCTGGCTGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCTCGAGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAATGAGACAACTGTGTTTCTGCACCCATCCTACAAGCAGCAATACTCTGACATTCTGTCACCACTACTGTCACCAATCAGGCCTGCAATTGTTCGCCGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAATTGCAGGAGCTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAGGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACACAACCTGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTGGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGCGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCACATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAAAAGCTTGATCCCATGGAACTATTTTCAGGTCATAGAACCCTTTCAATTAAAAACATGCCGAAGGAGAAAAACCAGAGTAATGGAGAAGTTTCAGTAACTAACGCAGATGTAGAGGCTGCATTAAAATATGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGCAAATGAGGATGATGAGCCTGCAGAATTAGGTGAATCTGTTTCCAATTTAAATAAAGAGAATGTACTAATGTCAAATGGAAGTGATCCTAAGGAAGATAGACCACCCTCTGTTGCTGCCAAAGAAGATGATGTTGACATGCTGGCTGATGTGAAACAGATGGCTGCAGCTGCAGCTGCATCTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTCTGGGATCCAATTATAGATAAAACAGCCTTAGAATCTGAAGTCAGGATTGAGGACACCGAATGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGTTGGAAGCTGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTACAGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGACAGAAAGAGGAAGCTGAAGAAGAAAATTTTGATTCTAAAAGCAGGACTCAAGCAAGTGATTCGAAGCCCAAACCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCTGAGCCAATGGCCATAGATAATGAGGTTGCTACTAGTATGGATTTTGTGTCTCCAAATTCAACTATGCAGAAAAAACGTAAGAAGTCTAAATTAACAATTGATGGTGAAGAAGAAAAGAGACTTAAGAAATCCAAAAAATCCAAGAGGGATCCTCCTGACATTTATGCTTCAGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATTAAGGCCATGTGAAAGTCTGGTTGACTTGGAACAGAAAACTGCTAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGATCCTGACGATAAAATCAGAAAAATTAAAGAAGGGAAGTCTTTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAATTGTTCATGAATACGGTCCTAACTGGTGTTTGGTTAGTGAAACGCTTTATGGCATGCCTGCTGGCGGGGCATATAGGGGGCGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTATTCCAAAAATATGTCTTGTTCTCGGTGGATAATTCAAATCATGAGAAGATCAATAATGCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTAGGATGTTGTTAGATGTTGCTTCTGAGCAGGTAAATAGAGAATTACTACTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGTCTGGAAAGTGGCATCACATGTCGACCGCAGGCAAAATCCATCTCCTACCTGTAACGGTCTCTATTTTGATCAGAGTTTCTTCACTTCCATTGGCCAGCATTCACAAAATTCCCTGAACAAACCCTCTGAAAAGATGACATTTACTAATTTGGCCCAGAGCAAGAAATTATTAGCAGCTGCACTTGATGACACCAGAAGTAGGCAGGAGAATGACAAAATCTTCCTCGCTAACCAGGGAGAAGACATGCCAGTGAGTACAGATCAGCTGGATATAACTCTGGAGTTCCAGAAAGAGGAGAGTGATTCCTTATCTTCATTACCATCTGTTATAAATTTATCAATATATGGGACTGAAGCACTACCATCTTTAAATAAGCAAACAGGAGAAGATGATCATCTTAAAGTTTGTTTTTCTGCTGCTGAGTATCGTTTCAGGGAGGCAGCAAGAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCAATAAATGATGCAAGGTCTCGACCTGGATCCAGGATACAATCTTCTGGAAAGCAAAAGTCCATTTCTGACTTTAATAAGCCGTCTAGGTCTAAGTCCAAAAGAGCTTCAGTGGATCCTAGTGAAATGCATCATCATCAGGCTGAGCCATTATTGCAGTCAATGTCACCACTTAAGGATCTGAGATTTGATCTCACTTCATGTACTATGGACGAATTTGGAATTGATATGGGTAGCAATCTTCCGTTTGAATTGAATGGGGAAAGTTCATTGGAAATGGAAAATTTAGAAGTGCTCCCACATGATTATGTAGCTGGTTTGATCTCAGGCCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTAGATAG 4557 0.4095 MYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGVDIQLSSSVCSMLLPSSFSTVDLRGLGLIFTHLDHSMTSWENDEVQAIETPATLIMERTDMADLDVIRPGLKCQKKVQGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTMRHPVYDIHQMKANPVSYMYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSKNETTVFLHPSYKQQYSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQSNGEVSVTNADVEAALKYVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYANEDDEPAELGESVSNLNKENVLMSNGSDPKEDRPPSVAAKEDDVDMLADVKQMAAAAAASGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEELEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEARQKEEAEEENFDSKSRTQASDSKPKPKKKPKKAKFKSLKKGSLTSGLRPVKEESQAEPMAIDNEVATSMDFVSPNSTMQKKRKKSKLTIDGEEEKRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAELRPCESLVDLEQKTASRSKMGGKISITPMPVKRILTIKSEKLKKGSLWSKDCIPSADFWLPQEDAILCAIVHEYGPNWCLVSETLYGMPAGGAYRGRYRHPVHCCERFRELFQKYVLFSVDNSNHEKINNAGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDRRQNPSPTCNGLYFDQSFFTSIGQHSQNSLNKPSEKMTFTNLAQSKKLLAAALDDTRSRQENDKIFLANQGEDMPVSTDQLDITLEFQKEESDSLSSLPSVINLSIYGTEALPSLNKQTGEDDHLKVCFSAAEYRFREAARACEEDSSGWASSAFPINDARSRPGSRIQSSGKQKSISDFNKPSRSKSKRASVDPSEMHHHQAEPLLQSMSPLKDLRFDLTSCTMDEFGIDMGSNLPFELNGESSLEMENLEVLPHDYVAGLISGLDDCTAFPEYTDIR. 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04946 1518 Gene3D - 1 232 IPR038718 -
Seca8g04946 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 701 IPR027417 -
Seca8g04946 1518 Gene3D - 499 747 IPR027417 -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 1013 1041 - -
Seca8g04946 1518 Coils Coil 745 765 - -
Seca8g04946 1518 PANTHER HELICASE SRCAP-RELATED 1 1417 - -
Seca8g04946 1518 Coils Coil 868 888 - -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 930 954 - -
Seca8g04946 1518 SMART helicmild6 558 641 IPR001650 -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 1402 1418 - -
Seca8g04946 1518 Gene3D - 1113 1174 - -
Seca8g04946 1518 Pfam SNF2-related domain 5 276 IPR000330 GO:0005524|GO:0140658
Seca8g04946 1518 CDD SF2_C_SNF 517 652 - -
Seca8g04946 1518 SMART ultradead3 1 176 IPR014001 -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 788 807 - -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 1392 1445 - -
Seca8g04946 1518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 164 IPR014001 -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 930 1045 - -
Seca8g04946 1518 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 233 298 - -
Seca8g04946 1518 FunFam Photoperiod independent early flowering protein 1113 1174 - -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 762 783 - -
Seca8g04946 1518 Coils Coil 919 939 - -
Seca8g04946 1518 CDD DEXQc_SRCAP 1 209 - -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 763 777 - -
Seca8g04946 1518 MobiDBLite consensus disorder prediction 1419 1440 - -
Seca8g04946 1518 FunFam Photoperiod-independent early flowering 1 1 232 - -
Seca8g04946 1518 Pfam Helicase conserved C-terminal domain 531 641 IPR001650 -
Seca8g04946 1518 Gene3D - 233 312 - -
Seca8g04946 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 209 IPR027417 -
Seca8g04946 1518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 682 IPR001650 -
Seca8g04946 1518 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 499 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04946 Seca-Chr8 136977401 136984407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04946 503 661 RAD5 or RAD16-like Gene Family AT5G43530 33.529 4.13e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g04946 SNF2_N 1.8e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04946 K11661 - gmx:100794898 2574.66