Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04937 ATGAATGAGAACAAGATTGATTGTCTAGGACGGATTCAACAAAGCCATGGACTAAATGGTGATTTCAATTCAGAGTTTGGTAATTGTTCTTCTCAGTATTTTGATATCAAACAGGCTTCCAATATGGGAACTTGCAATCAACCATTTGTGATGTCCTGTGGTGGAGGAGGAGTGGAACAGCCACCATATATAGGCCAAGGCAAATCATCTAGCACTATTATCAGCCGTTTTGAGTCACCAGCTACTGCCTTTTATGCAACAGAAATCTGCATGGGTTTTCCACAATATGATTGCCAACAAGTTGGTAATCCCTCTTTGGCATCTCAATTTTCTAAGATTAATGATTTGGAATTCCCTTTGTATCAATGTCCCAGGGATAACCTTTTCCTGGATTCAGCAAACCAACCTGGCCCCAACTTTGAGTTGTCAAATCCTTTGCAAGCAATACTGAAACCCCAATTGAATAGTGATCAATGTTGTAGATCTCCTGAAAAATCTAATAAAATCCCATGTGGGAATTTTCCTGACAGCAATTTTCTTCCATTTGAACAACATAAGTTGTTCAATGATGATGCTGCCTCAATTAGTAGGAGTGCATCCCTTCCTTCTAAAGGAAATCAGGATCACACAGTTTCTTGTGGTTCATATAATTTACCTGTTTCACAGCTCAGCTTCTCTTCTCAGCAAGAGAAGTTGTCTCCAGCACTCTCTGCAGGAAATTTGTCAACTATTTCTGGAAACCCTGCTTCTAATGGCCCCTCAGTCTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAAAGTCATTTGCAGAAATACAGAATTGCGAAATACATGCCAGAGTCAACTCAGGGGAAATCTGACAAAAGAACCCATGTAGAGAATGTGCAACTTGATGTCAAAACTGGCTTACAAATTAGAGAGGCACTTCAGCTGCAGCTAGATGTTCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTGCAGTTGCGGATTGAGGAACAAGGTAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAAGTAATGACCTCCTGAATACTCAGAATTTGAGCAATACAGCCAATAGTGATAAACCAAATAGTCCTAAAGATGTTGAGGTTTCCATTTCTGAAGGGTCTGGAAAATCCTTATTCCATTCCAAGATAAGTTAG 1296 0.4028 MNENKIDCLGRIQQSHGLNGDFNSEFGNCSSQYFDIKQASNMGTCNQPFVMSCGGGGVEQPPYIGQGKSSSTIISRFESPATAFYATEICMGFPQYDCQQVGNPSLASQFSKINDLEFPLYQCPRDNLFLDSANQPGPNFELSNPLQAILKPQLNSDQCCRSPEKSNKIPCGNFPDSNFLPFEQHKLFNDDAASISRSASLPSKGNQDHTVSCGSYNLPVSQLSFSSQQEKLSPALSAGNLSTISGNPASNGPSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPESTQGKSDKRTHVENVQLDVKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSNDLLNTQNLSNTANSDKPNSPKDVEVSISEGSGKSLFHSKIS. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04937 431 Gene3D - 257 316 - -
Seca8g04937 431 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Seca8g04937 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 254 401 IPR044848 GO:0003700
Seca8g04937 431 MobiDBLite consensus disorder prediction 238 257 - -
Seca8g04937 431 Pfam MYB-CC type transfactor, LHEQLE motif 341 388 IPR025756 -
Seca8g04937 431 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
Seca8g04937 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Seca8g04937 431 MobiDBLite consensus disorder prediction 394 431 - -
Seca8g04937 431 FunFam Myb family transcription factor 257 315 - -
Seca8g04937 431 Coils Coil 344 364 - -
Seca8g04937 431 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04937 Seca-Chr8 136649489 136653391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04937 241 385 G2-like Transcription Factor Family AT4G28610 58.784 1.39e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g04937 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04937 - - gmx:100780919 635.565