Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04936 ATGTATAGTGGATTTCCTTGCCATGAAGAGCCACTTTATGAGCATTTCACACAAGAACATAGCAAGGTGGGTGATGATTCTGCCTTTAGTAGTCAAGCTGAGGTTGCTTGTGCCACTTCTGGAAACTCTGCTTCTAGTACAGCTCCAATAAGGAAAAACAGAATAAAATGGACTAAAGATCTGCATGAGCAATTTGTTGCTGCTGTCAACAGCCTTGGTGGTCCTCAAAAGGCAAAGCCTAAGGCAGTGCTACTTAAGATGGATTCAAAGTCGCTGACCATATTTCATGTTAAAAGTCACTTGCAGAAATATCGGACCGCAATATTCATGCAGAACACTTTAAAGGGTAAAGTTCTTGTTCAAGTTTTGTCACATATATAG 381 0.4042 MYSGFPCHEEPLYEHFTQEHSKVGDDSAFSSQAEVACATSGNSASSTAPIRKNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLLKMDSKSLTIFHVKSHLQKYRTAIFMQNTLKGKVLVQVLSHI. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04936 126 FunFam Two-component response regulator 48 110 - -
Seca8g04936 126 Pfam Myb-like DNA-binding domain 56 105 IPR001005 -
Seca8g04936 126 SUPERFAMILY Homeodomain-like 50 106 IPR009057 -
Seca8g04936 126 Gene3D - 51 109 - -
Seca8g04936 126 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 106 IPR006447 GO:0003677
Seca8g04936 126 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 35 107 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04936 Seca-Chr8 136632799 136633590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04936 46 119 G2-like Transcription Factor Family AT5G06800 59.211 5.24e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g04936 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04936 - - gmx:100776650 174.481