Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04935 ATGTATCTAAATAACAACATAACCAAGTTTGGTGAATCTGCACAACAAAGCTTTGAGCCCATCAAATCACCCTGCATCACCATCACTCCTTTGCAAACAACAGCAACCGTTGATGTTCAAACTCAGCAACACAATCAGAATCAAATTGACCTTCCTGTTTGGAGCATTGAGTTTCCAATGACAACAACAGACTCTTCCTTTTTGTATTTCCAAGCCTCTAAAGATAACTACTCTGCTAGTACCACCAAACAAGATCACCTTACCTCCTCTCAATTCACAAGCTCCTTCCAATCGGTTGCAGAATCTTTCATGTCTAGCAGTGAAGATAGTATTTCTTCTTCTGAAAAGTATAGTGAATTTCCTTCTTGTTCTGGAAAATTTGATGGTTTTCTGTCTGACAATACACCAATTTATGAGCACTTTGCACAAGAACATCAGAACATGCTGGAGGATGATGCTTCCCCAGATAAGAGGTCCCTTGAAATTTCCTTTCAGAGAACTCAGTGTGATTCATGTACAAAGCCAGACAAACAGTCTTCACCTTGTGGAGTTGCTTTTGCAACAACTAGCAACTGTGATTCCAGGGGAACAGCAACTCATAAAAGAAGAATAAGATGGACAAAAGATCTGCATGAGCCATTTATTAAGATTGTTAACCACCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATACTAGAGATGATGGGTTCGGATGTGCTGACCATTTCACACATTAAAAGTCATTTACAGAAATATCGATCTTCATCACTTATGCACAAAGCTCTGAAAGGAAGATCCGATGAAGAACATAAAAAAGACGGGATTACTGAGCTTCAAGTCCAAATGTAA 852 0.3944 MYLNNNITKFGESAQQSFEPIKSPCITITPLQTTATVDVQTQQHNQNQIDLPVWSIEFPMTTTDSSFLYFQASKDNYSASTTKQDHLTSSQFTSSFQSVAESFMSSSEDSISSSEKYSEFPSCSGKFDGFLSDNTPIYEHFAQEHQNMLEDDASPDKRSLEISFQRTQCDSCTKPDKQSSPCGVAFATTSNCDSRGTATHKRRIRWTKDLHEPFIKIVNHLGGPEKAKPKAILEMMGSDVLTISHIKSHLQKYRSSSLMHKALKGRSDEEHKKDGITELQVQM. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04935 283 FunFam Two-component response regulator 197 260 - -
Seca8g04935 283 Pfam Myb-like DNA-binding domain 205 254 IPR001005 -
Seca8g04935 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 258 IPR017930 -
Seca8g04935 283 MobiDBLite consensus disorder prediction 264 283 - -
Seca8g04935 283 Gene3D - 200 257 - -
Seca8g04935 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
Seca8g04935 283 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Seca8g04935 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 181 268 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04935 Seca-Chr8 136591757 136602134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04935 198 265 G2-like Transcription Factor Family AT5G06800 58.824 4.77e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g04935 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04935 - - psat:127115590 227.639