Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04934 ATGGGTTCTGGCTCTGTTACCAAATCACCACCACCACCACCCTCTTCCTCCTCGCCGCCCAACTCTTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGTAAAAAAATATACTTTGAAGCAGCTCAGGCCAAACCAAGTGGTGGGGCCTCTTCATCTTCTTCTTCATCCATAGGGCCAAAGAAGGGAAGGGGTGGTGCTGTTCAGGGAGCTCAACCTCCTAGGTGTCAGGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCATTCCAAATCCCCTACTGTCGTTGTCGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGTACACTCTCTTACATAACTTCGGTAGCATTTTTATTTCAAGAAAAGCTAATATCCTCTTTGATAGTCCTTGCCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGCTGCCGAAGGCGCCTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCAAGCTCCTTATTAGCCTCACGTTATGCCAGACTTTCTTCACCTATTTTTGAAAACAATGGCAGAGGTGGTGGTTTTATGATGGAATTTGCTCCATACCCAAAGCTTACTCTGAGAAATGCATCACCAACTCCCAGATCATCTGAGCCTGTTCCAGATAATCACACTACAACACTTACCTGGCAGGCCAACTCACAGACACCATCTGACTTTTTCCTGCAAGACTCAGTGGGTGGGACAAGCTTCCTTGGTCCCAGACATCCTCCAGTGGAAAGTTACACTGAAGTTGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAACACCAAGTGGTGAGCTGAACAACTTCTTGAATTTCAATGGGACACTCATGACACAACTTGCTGCATCTTCTCCAATTGCAGCCATCCATCAACTTCCAAATGCCTCATGGTATTTCAAAGGTGTTGGTTCTGATAATTGTTCACCCGAGGTTGTCCCTGATCTCGGTCTGGGTCAGATTTCACAGTCTCTTCATAGCCATCCTCCTGGTGAGCTTGATGTGTCACAGCAGAACAGGAGGCATTACATGGATATGGGACAGTCCAGGGCCTGTGAGTCTCCTCACTGGTCACATTAA 1170 0.4692 MGSGSVTKSPPPPPSSSSPPNSSTESLDGLKFGKKIYFEAAQAKPSGGASSSSSSSIGPKKGRGGAVQGAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVVVAGLEQRFCQQCSSTLSYITSVAFLFQEKLISSLIVLARFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLASRYARLSSPIFENNGRGGGFMMEFAPYPKLTLRNASPTPRSSEPVPDNHTTTLTWQANSQTPSDFFLQDSVGGTSFLGPRHPPVESYTEVADSSCALSLLSSQTWGSRNTTPSGELNNFLNFNGTLMTQLAASSPIAAIHQLPNASWYFKGVGSDNCSPEVVPDLGLGQISQSLHSHPPGELDVSQQNRRHYMDMGQSRACESPHWSH. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04934 389 SUPERFAMILY SBT domain 73 120 IPR036893 GO:0003677|GO:0005634
Seca8g04934 389 MobiDBLite consensus disorder prediction 45 59 - -
Seca8g04934 389 MobiDBLite consensus disorder prediction 43 73 - -
Seca8g04934 389 SUPERFAMILY SBT domain 145 179 IPR036893 GO:0003677|GO:0005634
Seca8g04934 389 Pfam SBP domain 75 121 IPR004333 GO:0003677
Seca8g04934 389 Pfam SBP domain 145 173 IPR004333 GO:0003677
Seca8g04934 389 ProSiteProfiles Zinc finger SBP-type profile. 72 174 IPR004333 GO:0003677
Seca8g04934 389 Gene3D - 65 161 IPR036893 GO:0003677|GO:0005634
Seca8g04934 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 361 IPR044817 GO:0003677
Seca8g04934 389 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04934 Seca-Chr8 136580551 136585277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04934 30 384 SBP-box Gene Family AT2G42200 40.263 2.30e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca8g04934 SBP 7.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04934 - - gmx:100807165 487.263