Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04930 ATGGCTCTCGGATCGTCTTCAAGAAAGGAGTTCAAGCCGACAGATGATCAACTGCTGCGATTGTTCCTCTACAATAAGGTCCATGGTAAACCTGTGCCTAACGATGCAACCATTCTTGAATATGACTTGTTTGGTGAAAGAAACCCTTGGGAGATTTGGCAAGAGTTTGAAGGTCCCTACTCTTACGATGAAAAGGACCTCTACTTCTTCACCATCTTAAAGAGGAAGTTTGAAGGAGGCACTAGCGGACGCGTGGTTCGCACGATTGGGTGTGGCGCATGGGAAGGTGAAGATGTTGGAAAAGCTATAGTGGCTACTGACACGAAACAAAACCTCGGCATGAAGAAACGTTATCGCTTTGAGAAGAGTGGCACTGAACACGATGGTGGGTGGATCTTGCATGAATACAGCCTTCACTCATCTTTGATAAACACCGACCCTTCAGACATTAATGATGTTGGGTTGGGTGAAGAAGATATTTGCGAAGGACCACTAAACCATGCAGACAGTGGAAACAACATAACTGAGATGGTTGAAACTAGCACTAGAGCAGAGTCAGAATGTGAGGATGAAGAAGATGGTGACCCCACTTTGTCTTTTGGGGAGTTATTTGCGTTGGAGTTAAGAAGTTATGCAGAATGCTTGACCAAAGAGGAAGACATCCCCATGCTTCCCAATACATTTTACAGGGACTTGTTGTCGGAAAATATTGATATTAAGTACCTCAAGTAG 732 0.444 MALGSSSRKEFKPTDDQLLRLFLYNKVHGKPVPNDATILEYDLFGERNPWEIWQEFEGPYSYDEKDLYFFTILKRKFEGGTSGRVVRTIGCGAWEGEDVGKAIVATDTKQNLGMKKRYRFEKSGTEHDGGWILHEYSLHSSLINTDPSDINDVGLGEEDICEGPLNHADSGNNITEMVETSTRAESECEDEEDGDPTLSFGELFALELRSYAECLTKEEDIPMLPNTFYRDLLSENIDIKYLK. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04930 243 ProSiteProfiles NAC domain profile. 5 166 IPR003441 GO:0003677|GO:0006355
Seca8g04930 243 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Seca8g04930 243 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Seca8g04930 243 PANTHER NAC TRANSCRIPTION FACTOR 56 10 151 - -
Seca8g04930 243 SUPERFAMILY NAC domain 11 147 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04930 Seca-Chr8 136506506 136508526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04930 10 147 NAC Transcription Factor Family AT3G15510 33.099 2.42e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g04930 NAM 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04930 - - mtr:11433340 215.698