Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g04929 | ATGTTGGCCATGGCTGAATCACAGGCGAACAGTGAGAGCAGGAATGGAGCAGCACAAGGAAACGAAGAACAAGATGATTACATGGGTGACCTTTCTCAGTTTCTTCCTTCCGAGGCTCTTAACCCTCCAAAGTCTTCATCCAAAAAGATTACTAACAAGAAAGATACTTCAGTCAACTCTTCCAAGAGTCAGTTAAAAACACTTAGCTGGCAAGAACGGCGAAAACTTGAAAGAGAAAGAAAGCAACAACAAGAGGATGAGGAAACATTAGCTAAAGTGGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTGCTCAAACAGATGGGTTATACCCCTGGTTCTGCCCTTGGCAAGCAGGGCTTGGGCAGGGCTGAACCAGTGGGGATTGAAATTCGACGGTCACGAGCAGGTATAGGCCTAGAAAATCCTCACAAGGAGAAGAGGAAAAAGGAGGAAATCATGATCGACAGGAAAAAGAGGAAAGAGCAGGCCCTAATGGAAGAATTTGGGTCTAGGCAGAAGTCACGGTGGCAGAGTAGGAGAGTTGTAGTTAATTTCAACAAGGCAAAGGCTGCCCTTGACCAATTGGAGAATAGGGAAATTGTGGTTCCACAAAAGAATGAGGATGATGCTGAGGATGAAGATGAAGAAGACGAAGAAATAACAGAAGAGGACTTGCAAGATGTTTTGATGAAACTGAGGGACGAGTTTAATTATTGCCTCTTTTGTGGATGCAAATATGAATCAAGGGATGCCCTTTTGGCCAACTGCCCTGGAACCAATGAAGATGACCACTAA | 804 | 0.444 | MLAMAESQANSESRNGAAQGNEEQDDYMGDLSQFLPSEALNPPKSSSKKITNKKDTSVNSSKSQLKTLSWQERRKLERERKQQQEDEETLAKVEAPIPQSNIGFKLLKQMGYTPGSALGKQGLGRAEPVGIEIRRSRAGIGLENPHKEKRKKEEIMIDRKKRKEQALMEEFGSRQKSRWQSRRVVVNFNKAKAALDQLENREIVVPQKNEDDAEDEDEEDEEITEEDLQDVLMKLRDEFNYCLFCGCKYESRDALLANCPGTNEDDH. | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g04929 | 267 | Coils | Coil | 73 | 93 | - | - | |
| Seca8g04929 | 267 | PANTHER | UNCHARACTERIZED | 21 | 267 | IPR039249 | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 38 | 67 | - | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 205 | 224 | - | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 68 | 92 | - | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Seca8g04929 | 267 | ProSiteProfiles | G-patch domain profile. | 99 | 145 | IPR000467 | GO:0003676 | |
| Seca8g04929 | 267 | SMART | DUF4187_2 | 213 | 267 | IPR025239 | - | |
| Seca8g04929 | 267 | Pfam | Domain of unknown function (DUF4187) | 214 | 267 | IPR025239 | - | |
| Seca8g04929 | 267 | MobiDBLite | consensus disorder prediction | 209 | 224 | - | - | |
| Seca8g04929 | 267 | Coils | Coil | 150 | 170 | - | - | |
| Seca8g04929 | 267 | SMART | G-patch_5 | 97 | 143 | IPR000467 | GO:0003676 | |
| Seca8g04929 | 267 | Pfam | G-patch domain | 99 | 142 | IPR000467 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g04929 | Seca-Chr8 | 136492295 | 136494849 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca8g04929 | 91 | 141 | C2H2 Transcription Factor Family | AT5G26610 | 45.098 | 9.39e-07 | 47.4 |