Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04928 ATGGTTTGCGACTACGTTTACAAGCATTTCGTCGTCGCTGTCTTCTCGGCAACTTTGATTTCTCAGGGTTTAGCATTTACTGATCCCTCCGATGTCATAGCTCTCCAGGATCTATACAAGACCTTAAACTCTCCACCAGTGCTCCAAGGCTGGAACGGTGGCGATCCTTGTGAGGAGTCTTGGACAGGAGTAGCATGTTCTGGGTCATCAGTTATACACCTCAAAATTCAAGGATTGAACCTCACAGGAGATCTTGGAGGCTTGCTCTATAATCTACAGAATTTGAAGCAACTTGATGTCAGTTCGAACAACATAGTGGGTGAAATACCATACGGTTTACCTCCCAATGCCACACATATAAATTTGGCTTGCAACTACTTGAGCCAAAATATCCCCTATTCATTATCAACCATGAAAAAACTAAGACAACTGAATTTAAGCCACAATCTTCTTTATGGACCCATTGGCAATGTGTTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCACCGGAGACCTGCCAAGTTCATTTGGTTCCTTGACAAACCTTGATAGATTGTTCCTGCAGAATAACAGATTCACAGGATCAGTCACCTACCTGGCTGAGCTTCCACTTATTGATCTGAATATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACAACATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTTCATGCAGCGGAGGACTCCCCTCCCTGGGCATTTCCTTTGGACAGTGTACCCGTTGAGCACAATACTAGTCGCCCACCCACAACTCAGGCAAATGCCATCGAGAACTATGTTCCTCCCAAGGTAAGAAAACACAAGAAACGTATGGGTCCTGGAGGAATAGCTTTTATGGTTGGTGGAGGAACATTATTGGTGACAGGATTGGCCCTCTTCATCGCGATCCGTTTGAATAAATTTCATATACTGAGACTGAAGAGCTTCAGAAGCAACCATAGTTCATTGCCTTCTTTTCCAATCAGTGCAGTCAAAGTATTGGTGATAGAGGTCACTTCAACGGCACTTGATGAAAGTCTGAAAATCCCATCTTTTAACGCTGCATCTCTTTTGGATCCAAGGCGATTACCTTCACAGAACCATAAAAGAATTGGGGGAACGTCAAGAAGAAGTTTTTCCGAAAGAGACAGATTCACTGAAAGGACGAAGGTTTATACAGTAGCGGAGGTTCAGTTGGCTACAAACAGCTTCAGTGAAGACAACCTTCTGGGAGAGGGAGCTCTTGGCCCTGTTTACAGAGCTCAATTTCCAGATAACAAGATTCTGGTCGTGAAGAATATCCACATGGCGGGCTTATCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTTTCTACCGCTTCTCGTCTGAAGCACCCCAACATCATTGCACTTAAAGGTTACTGTTTGGAGCATGGACAGCATCATCTTGTCTACGATTATGTCAGAAATTTAACTCTAGACAGTGCTCTACACAGTGCAGCATACAAACCTTTATCGTGGGGCCTCCGTGTCCGAATTGCTCTATGCATTGCTCAAGCTCTGGACTATTTGCACACCACGTTCTCCCCTCCTGTCGCCCATGGCAACGTGAAGGCTGCCAATATTCTACTGGACGAAAATCTGGTGGCTCGTGTTTGTGACTGTGGTTTGGCTATTTTGAAACCACTGATGAGCAATGAAGTCAAAACTCGGGCTTCTGAGATTGCTATTCGAGATACAGGCTACAGTTCACCTGACCATGGCGAACCGGGAATTGGCAGCACAAAGAGTGACGTCTTTGCCTTTGGAGTGTTACTGCTGGAACTGTTATCAGGAAGAAAACCTTTCGATGATGTTAAGCCAAAGGAAGAGCAATATCTAGCAAAATGGGCTTCATCAAGGCTTCATGATAGCGAGAGTTTGGAACAGATGGTGGATCCGGCAATTAAAAGGACACTCTCATCCAAGGCCCTTTCTGGTTATGCTGATATCATCTCCCTCTGTATTCAGCCTGTGAAGGAATTCCGACCTCCAATGTCTGAAATCGTAGATTCTCTTGTATCTTTTTCACAAAAGTTCGACATGTCAAAGAGCGGTGTAGAAGATGGTACTGAATTTGATCCACTTGAGAGGTCTTTCCGTACAACCACCTCCCGCTTTTTGCCTTCACCTACAATGAGCTACGTATCTGCCTAA 2214 0.4399 MVCDYVYKHFVVAVFSATLISQGLAFTDPSDVIALQDLYKTLNSPPVLQGWNGGDPCEESWTGVACSGSSVIHLKIQGLNLTGDLGGLLYNLQNLKQLDVSSNNIVGEIPYGLPPNATHINLACNYLSQNIPYSLSTMKKLRQLNLSHNLLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLTNLDRLFLQNNRFTGSVTYLAELPLIDLNIQENLFSGILPQHFQSIPNLWIGGNKFHAAEDSPPWAFPLDSVPVEHNTSRPPTTQANAIENYVPPKVRKHKKRMGPGGIAFMVGGGTLLVTGLALFIAIRLNKFHILRLKSFRSNHSSLPSFPISAVKVLVIEVTSTALDESLKIPSFNAASLLDPRRLPSQNHKRIGGTSRRSFSERDRFTERTKVYTVAEVQLATNSFSEDNLLGEGALGPVYRAQFPDNKILVVKNIHMAGLSFSEEEKFLDVVSTASRLKHPNIIALKGYCLEHGQHHLVYDYVRNLTLDSALHSAAYKPLSWGLRVRIALCIAQALDYLHTTFSPPVAHGNVKAANILLDENLVARVCDCGLAILKPLMSNEVKTRASEIAIRDTGYSSPDHGEPGIGSTKSDVFAFGVLLLELLSGRKPFDDVKPKEEQYLAKWASSRLHDSESLEQMVDPAIKRTLSSKALSGYADIISLCIQPVKEFRPPMSEIVDSLVSFSQKFDMSKSGVEDGTEFDPLERSFRTTTSRFLPSPTMSYVSA. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04928 737 Gene3D Transferase(Phosphotransferase) domain 1 495 712 - -
Seca8g04928 737 ProSiteProfiles Protein kinase domain profile. 416 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04928 737 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Seca8g04928 737 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Seca8g04928 737 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Seca8g04928 737 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 361 704 - -
Seca8g04928 737 FunFam Leucine-rich repeat receptor-like protein kinase 494 703 - -
Seca8g04928 737 Pfam Protein tyrosine and serine/threonine kinase 420 692 IPR001245 GO:0004672|GO:0006468
Seca8g04928 737 SUPERFAMILY Protein kinase-like (PK-like) 391 692 IPR011009 -
Seca8g04928 737 SUPERFAMILY L domain-like 27 236 - -
Seca8g04928 737 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Seca8g04928 737 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 382 493 - -
Seca8g04928 737 Gene3D Phosphorylase Kinase; domain 1 379 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04928 Seca-Chr8 136486679 136491135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04928 27 737 Strubbelig Receptor Gene Family AT5G06820 55.292 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca8g04928 PK_Tyr_Ser-Thr 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04928 - - tpra:123896060 1164.83