Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04920 ATGGCGTTTTCTTTGACTATAGAAGAAGCAGAACAACCAGAGCAAGAGACACAGTTTTCACTTGATCACTCTCATTCTCATATTCTCATGGCTTCCAACAGTGCTAAGAGTACCAACTCAACAACAACTCAACTTGAACCACTCCCACCACCTCACCATAACCATAACCATCACCACCACCACCACCCACAACAACAACATCCTCATCAAATACAAGACCATCAAATCTCTTTTGGCATGATGCCTTCTTCTTCTATTATCCCTGGAAACTACCTAAGCAAGGATTCTGGTGCTTATGATTTAGGTGAATTGGATCAAGCCTTTTTTCTGTATCTTGATGGACAAGCTGACCCATCTAGTGGTCAAGACCAAAGACCAGAGAACTCATCATCATCAGGAATGAGGCCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCATGTAGCACCACCACCATCCAATTCAAAGGCTACCTTGGAGATACCTTCTCTACCAAACAATGGTCCCAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACGCTCGGAATGAGACTATCTCTGCACCTGAACCACCAAAAACTGTCAAGCGAGAGAGCAATCGCAGCAAGGCTCCAACTTCAAGTTCTGAGCATGAAGGGCCGAAAACCCCCGATCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTGAGGAAAAAGGCTTATGTTCAGCAGCTAGAGACTAGTAGGATCAAGCTGAATCAGCTGGAACAAGAACTGCAGCGTGCTAGAGCTCAAGGCATATTAATGGGTGGTGGTGCACTTATGGGAGGAGAACAAGGCATTCCCGTTGGTATGGGTAACATTAGCCCAGATGCTGCCATGTTTGATGTGGAGTATGCGAGGTGGTTAGAGGAGCACCAAAAGCTAGTGGGTGAGCTAAGAGCTGCGCTCCAGGAACACCTCCATGAGAATGAACTTAGGCTATATGTGGAGAATTGCTTAGCTCATTATGACCAAGTGATGAATCTTAAGAGTATAGTAGCAAAGACTGATATATTCCATCTTGTGAATGGGATATGGATGACCCCAATGGAACGATCCTTCATGTGGATCGGTGGCTTCAGGCCATCTCAACTCATTAAGATCATTCTGAGTCAAATTGAGCCTCTTACTGAGCAACAATTACTTGGGATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGATGCTCTTTCCCAAGGGCTTGAAGCCCTCAATCAATCTGTCTCAAACACTATAACATCTGACTCTTTGAGCTCTCCACCCAATATGGCTAACTACATGGGAACGATGGCTGTGGCCATGAACAAGCTCTCCACTCTTGAAGGCTTTGCGAGACAGGCTGATCATCTGAGGCACCAAACCCTTCACCGTCTGCATCAGCTGCTAACAACACGCCAAGCTGCAAGGTGTTTGGTGGCAATATCTGAATTCTTCCATCGCCTGAGAGCACTGAGTTCCCTGTGGTCGACACGCCCTCGCCAAGAATAG 1545 0.4667 MAFSLTIEEAEQPEQETQFSLDHSHSHILMASNSAKSTNSTTTQLEPLPPPHHNHNHHHHHHPQQQHPHQIQDHQISFGMMPSSSIIPGNYLSKDSGAYDLGELDQAFFLYLDGQADPSSGQDQRPENSSSSGMRPPPTLNIFPSQPMHVAPPPSNSKATLEIPSLPNNGPKRPSEPSMELANARNETISAPEPPKTVKRESNRSKAPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGILMGGGALMGGEQGIPVGMGNISPDAAMFDVEYARWLEEHQKLVGELRAALQEHLHENELRLYVENCLAHYDQVMNLKSIVAKTDIFHLVNGIWMTPMERSFMWIGGFRPSQLIKIILSQIEPLTEQQLLGICGLQQSTQEAEDALSQGLEALNQSVSNTITSDSLSSPPNMANYMGTMAVAMNKLSTLEGFARQADHLRHQTLHRLHQLLTTRQAARCLVAISEFFHRLRALSSLWSTRPRQE. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04920 514 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 265 IPR004827 GO:0003700|GO:0006355
Seca8g04920 514 MobiDBLite consensus disorder prediction 35 72 - -
Seca8g04920 514 Pfam bZIP transcription factor 223 262 IPR004827 GO:0003700|GO:0006355
Seca8g04920 514 Gene3D - 222 272 - -
Seca8g04920 514 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g04920 514 Coils Coil 307 327 - -
Seca8g04920 514 Coils Coil 242 269 - -
Seca8g04920 514 CDD bZIP_HBP1b-like 223 271 - -
Seca8g04920 514 SMART brlzneu 219 272 IPR004827 GO:0003700|GO:0006355
Seca8g04920 514 ProSiteProfiles DOG1 domain profile. 296 510 IPR025422 GO:0006351|GO:0043565
Seca8g04920 514 MobiDBLite consensus disorder prediction 117 139 - -
Seca8g04920 514 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Seca8g04920 514 MobiDBLite consensus disorder prediction 114 225 - -
Seca8g04920 514 Pfam Seed dormancy control 314 388 IPR025422 GO:0006351|GO:0043565
Seca8g04920 514 SUPERFAMILY Leucine zipper domain 223 265 IPR046347 GO:0003700|GO:0006355
Seca8g04920 514 MobiDBLite consensus disorder prediction 35 49 - -
Seca8g04920 514 FunFam BZIP family transcription factor 222 271 - -
Seca8g04920 514 PANTHER TRANSCRIPTION FACTOR TGA9 140 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04920 Seca-Chr8 136376671 136383409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04920 89 514 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 61.261 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g04920 DOG1 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04920 K14431 - gmx:100799713 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04920 8 136376671 136383409 Seca2g04109 2 123998990 124005140 PCT