Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04907 ATGGATTCCAATACCCGTCAGGGTTATCAATTCCAACAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGCTCTGCACCAAGTTCACTTCTTGCAAATCTCACACCTTGTTCTGCTCTCAACAAGAGCAGCCACCTCTGGGAGGGTTCTGAATCTGAGAGATTTGTTTCGAGATTTGTGGGTTACGGTGCTGATAGCAGGAACGACACTACTGCTGCTGCTTCTTCTTCTAGCTTCCAAGAGTTGGAAGAGAATAAGCCTTCTTCTAAGTCTCTGAGTGGCATGAATTCCCAGCAGCAAGGCTATGGTGGTGGGTTGCCACCTCACTATCCTCTGAGACATGGTTCTGCTGCTACTTCCAGTTCTGCTATGGATGGTTCATTTGGGTTGGTGGGTTCAATGGGAATGGATCATGAAGCACCCCACAAGAGCTTTGGTTCCCATCTTCTCAGGCAGGGTAGTTCCCCTGCTAGCCTTTTCTCCAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGCTGTGAATGGCAGTAATGATGAAATTAGTCCATCTATTAATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAACTGCTTCTTCTTTGGGGATGTTGTCACAGATCTCTGAACTAGGGAGTGAGGATATTGAGACTACTAGCCCTGACGATGTGGGGCAGGGAAGTAGCAATGGTGATGCTCAACAATTTGGCCATGGATTCCCCTATGCTTCTTGGAATGATACAACACAACTCTCAGAGAATCTCAGTGTCTTGAAAAGAGGAAGAGGTGGTAATGAAAAGATGTTTTCTGATGTTCAGAATTGTTGTACTCAGAATGGAGATCTAGGAAATCAAGTTCACACATTATCTCATCACTTGAGTTTACCAAAATCTTCAGCAGAGATGGTTGCTATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACACGGATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACTAATACAGCAGACATGTTGGACTTGGCGGTTGAATACATCAAAGATCTTCAGAAACAATTCAAGAGTCTAAGTGAAAAACGAGCAAACTGCAAATGTATAAGCATGCAGAAGGCAGATACAAATCAAATTGCTTGA 1239 0.4383 MDSNTRQGYQFQQQNQPNSGLLRFRSAPSSLLANLTPCSALNKSSHLWEGSESERFVSRFVGYGADSRNDTTAAASSSSFQELEENKPSSKSLSGMNSQQQGYGGGLPPHYPLRHGSAATSSSAMDGSFGLVGSMGMDHEAPHKSFGSHLLRQGSSPASLFSNNISFQNGFATMKGVGNYGAVNGSNDEISPSINRLKSQISFSSRTASSLGMLSQISELGSEDIETTSPDDVGQGSSNGDAQQFGHGFPYASWNDTTQLSENLSVLKRGRGGNEKMFSDVQNCCTQNGDLGNQVHTLSHHLSLPKSSAEMVAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKSLSEKRANCKCISMQKADTNQIA. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04907 412 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g04907 412 FunFam Transcription factor bHLH130 family 335 404 - -
Seca8g04907 412 MobiDBLite consensus disorder prediction 71 119 - -
Seca8g04907 412 SMART finulus 340 390 IPR011598 GO:0046983
Seca8g04907 412 CDD bHLH_AtbHLH_like 339 392 IPR045239 -
Seca8g04907 412 Pfam Helix-loop-helix DNA-binding domain 339 385 IPR011598 GO:0046983
Seca8g04907 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 399 IPR036638 GO:0046983
Seca8g04907 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 407 - -
Seca8g04907 412 MobiDBLite consensus disorder prediction 71 104 - -
Seca8g04907 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 384 IPR011598 GO:0046983
Seca8g04907 412 MobiDBLite consensus disorder prediction 223 248 - -
Seca8g04907 412 Gene3D - 335 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04907 Seca-Chr8 136011474 136014855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04907 1 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.209 9.49e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04907 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04907 - - gmx:100819605 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04907 8 136011474 136014855 Seca8g04907 8 136011474 136014855 ECH
Seca8g04907 8 136011474 136014855 Seca8g08238 8 180075036 180076331 ECH
Seca8g04907 8 136011474 136014855 Seca8g04907 8 136011474 136014855 PCT