Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04906 ATGCTGCTTCATCTTCACATTCGTTGGATTCTTCTCCTCTCTCTCTCTGTTCCCTTCTCTTTCACTCTCAACTCAGACGGTCTCTCTCTTCTAGCCCTCAAAGCCGCCGTCGACGTGGACCCCACCGGTGTGCTTGACTCGTGGTCCGACTCAGTCCCCACACCATGCCACTGGCCCGGCGTCTTCTGCACCAACGACCGAGTCACCCAACTCGCCCTCCCTTCCAAGGGCCTAACCGGTTACATACCTTCCGAACTAGGCCTTCTCACTGAACTAAAACGACTTAGCCTCCCACACAACAACTTCACCAGAAGCATCCCTTCAAGCCTCTTCAACGCCACAAAACTCGTCGTTTTGGACCTCTCTCACAATTCCCTCTCTGGTCCCTTCCCTCCATCAATTACTTCCCTTAGAAGCCTCATGCATTTGGATTTGTCCTCTAATTCACTCTCTGGCCCTATCCCTGACTCACTCTCTTCCCTCCCCGGCCTCGTCGGAACCTTAAACCTATCTCATAACTATTTCTCCGGTGGCGTTCCGGTTTCCCTAGGGAACCTTCCGGTTGCTGTGAGTTTGGATCTCTGCGATAACAACCTCACCGGAGAAATTCCCCAGGTTGGGTCCCTCCTCAACCAGGGTCCCACCGCTTTCTCCGGTAACCCTGGCCTCTGCGGGTTCCCATTGCGGAACCCATGCCCTGAAGCTCGAAAGCCTCCAGAGATTTTCCCGAATGATGACCCTGAGAACCCGAACCAGAACCCGAATGCGCTTCAAACGGGTCCGGGTCAAGAAGAGAAGCTGAGAAGTGGGTCGCTTGTTCTTGCTGCCGTGATCTCCGGCGTGTCGGTGACGGGTTTGGTGGTTTTGCTGTCGGCGTGGATTCTCCGGCGACGGCGGAGGTTGACGGGCGGCGAGGGTGAATTTGGAAAGGGGAAGACGGACGGTGAGGTGGGTTCCGGGGAGGAGCAGAAGGGGAGGTTTGTGGTGGTGGATGAAGGGTTTGGGTTGGAGTTGGAGGATTTGTTGAGGGCTTCTGCGTATGTGGTGGGGAAGAGCAGGAGTGGGATTGTGTACAAGGTGGTCGGTGTCGGAAAAGGGTCTTTCCCGGCGCCGACGGTGGTGGCCGTTCGGCGGCTGAGTGAGGGTGATGATGCCACGTTAAGGTTCAAGGAGTTTGAGTCAGAGGTGGAGGCTATTGGCAGGGTTCGCCACCCCAATGTGGTTCCTTTGAGAGCTTATTACTATGCAAGTGATGAGAAACTGCTCATCACTGATTTCATTCGCAATGGAAGCTTGCACACTGCATTGCACGGAGGACCTTCCAATTCATTCCCACCATTATCATGGGCAGCAAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGGCTGATGTACATACACGAGTTTAGTGGTAGGAAGTATGTCCATGGCAACCTAAAATCATCAAAAATACTATTGGATGATGATCTCCATCCATACATATCTGGTTTTGGACTTACTCGTCTTGGTTTGGGTACCTTAAAGTCTACCACCACATCGTCACATAAACGGCAGATTTCAAACCACTCTGTTTTAACCTCAGCAATGGGTTCAAAATTTGCAGCTTCCTCTAACTACTACTTGGCACCTGAGGTGCGCATAGCTGGTGGAAAGTTCACTCAGAAATGTGATGTGTATTCCTTTGGCATAGTGCTGTTAGAACTTTTGACAGGTCGGTTGCCAGATTTAGGACCAGAAAATGATCATAAAGAGCTAGAAAGTTTTGTGAGGAAAGCATTCAGGGAGGAGCATCCCTTATCAGAGATTATAGACCCGGCACTTCTGCCTGAGGTTAATGCTAAAAAGCAAGTTATTGCAGCATTTCATGTTGCACTGAACTGTACAGAACTCGATCCAGAATTGCGACCAAGAATGAGAACAGTGTCTGAGAGCCTTGATCGCATCAAAATACAGTGA 1956 0.5107 MLLHLHIRWILLLSLSVPFSFTLNSDGLSLLALKAAVDVDPTGVLDSWSDSVPTPCHWPGVFCTNDRVTQLALPSKGLTGYIPSELGLLTELKRLSLPHNNFTRSIPSSLFNATKLVVLDLSHNSLSGPFPPSITSLRSLMHLDLSSNSLSGPIPDSLSSLPGLVGTLNLSHNYFSGGVPVSLGNLPVAVSLDLCDNNLTGEIPQVGSLLNQGPTAFSGNPGLCGFPLRNPCPEARKPPEIFPNDDPENPNQNPNALQTGPGQEEKLRSGSLVLAAVISGVSVTGLVVLLSAWILRRRRRLTGGEGEFGKGKTDGEVGSGEEQKGRFVVVDEGFGLELEDLLRASAYVVGKSRSGIVYKVVGVGKGSFPAPTVVAVRRLSEGDDATLRFKEFESEVEAIGRVRHPNVVPLRAYYYASDEKLLITDFIRNGSLHTALHGGPSNSFPPLSWAARLKIAQGAARGLMYIHEFSGRKYVHGNLKSSKILLDDDLHPYISGFGLTRLGLGTLKSTTTSSHKRQISNHSVLTSAMGSKFAASSNYYLAPEVRIAGGKFTQKCDVYSFGIVLLELLTGRLPDLGPENDHKELESFVRKAFREEHPLSEIIDPALLPEVNAKKQVIAAFHVALNCTELDPELRPRMRTVSESLDRIKIQ. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04906 651 SUPERFAMILY L domain-like 24 229 - -
Seca8g04906 651 Gene3D Ribonuclease Inhibitor 166 234 IPR032675 -
Seca8g04906 651 Gene3D Transferase(Phosphotransferase) domain 1 427 651 - -
Seca8g04906 651 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca8g04906 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 649 IPR046959 -
Seca8g04906 651 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Seca8g04906 651 Gene3D Ribonuclease Inhibitor 22 165 IPR032675 -
Seca8g04906 651 FunFam Leucine-rich repeat receptor-like protein kinase 139 234 - -
Seca8g04906 651 MobiDBLite consensus disorder prediction 234 264 - -
Seca8g04906 651 MobiDBLite consensus disorder prediction 246 264 - -
Seca8g04906 651 FunFam Leucine-rich repeat receptor-like kinase 28 134 - -
Seca8g04906 651 Gene3D Phosphorylase Kinase; domain 1 335 426 - -
Seca8g04906 651 SUPERFAMILY Protein kinase-like (PK-like) 348 647 IPR011009 -
Seca8g04906 651 PRINTS Leucine-rich repeat signature 116 129 - -
Seca8g04906 651 PRINTS Leucine-rich repeat signature 137 150 - -
Seca8g04906 651 ProSiteProfiles Protein kinase domain profile. 343 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04906 651 Pfam Protein tyrosine and serine/threonine kinase 350 645 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04906 Seca-Chr8 135989820 135993332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04906 23 649 Receptor kinase-like Gene Family AT3G57830 59.565 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g04906 PK_Tyr_Ser-Thr 2.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04906 - - tpra:123899429 896.73