Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04902 ATGGAGCAAACCACACTCGACTCCATTCAGTTCAACGAAGAAATCCAGGGAATCATGGCTCCGGCGCCGGAATCCGCCAGCTCCTTCACCGCGCTGCTCGAGTTGCCTCCCACGCAGGCCGTCGAGCTTCTCCACTCGCCGGAGCGCGCCGGAAAACCGCCTCACCACGTCAGCAATCCCACTGATACCAGGAATTTGACCTTCCCCTCCAACGCCGCGTTGATTGAACGCGCCGCCAGGTTCTCCGTATTCGCCGGAGAGAATTCGCCGCCGCCGGAGGTGAAGAGCGAGCTTCCGGAGACGGATTCGAACCCTAGTTCGACTCAGGGCGGTGGATGTGTCTCTGATCCCGTAGTCGAGAACAAGAACCCGAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCAAAGAAGAGCAAGGGCGTTGCCGACGAGAGCGACGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGCGTTCGTCGAGGTCAAGCCACGGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTAGAGATTTTATCAATGAAACTGGCTGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCATATTGGCTACTGAAGGAGCTTCTCTAATGGACAGTAACTTCCCTACCACAGTTGCACCCGTTGCGTGGCCAGAAATCCCACACAATGGAAACAAACAGCAATATCAGCAACCATGGCAATTTGATGCATTCCACCAACCACATTGGGGGAGGGAAGAAGACAACCCTAATTTCATGACTCCAGAAAACTCACTTTTGAGTTATGACTCATCGGCAAATTCAGGTAGATCAGATATCTCTGCACTCAAATCAGTTGAAGATGGAGCTGTGAACGGGTACAGAAGCTGTAGTACAGAACCTAATGAGTTCACTTTTGCTACTGTGCTTACTTCATGTACAGGTTCTGTCGGTTCCATGTTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAACTATGAAGCCCATGTTTATGTTGGAAGCTCACTTCTTGACATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAAGTGTATTTGAATGCTTGCCAGAAAGAGATGTAGTTTCTTGTACTGCTATAATCTCTGGATATGCCCAACTGGGTCTGGATGAAGAGGCAATGGAGCTATTTCGCCGGTTGCAAAGGGAAGGAATGCAGTCAAATTATGTTACTTATGCAAGTGTTTTAACTGCGCTTTCTGGGCTTGCTGCTCTTGATCATGGCAAGCAAGTGCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATTTGTGGTTCTCCAAAACTCTTTGATTGACATGTACTCAAAATGTGGAAACCTCACATACTCAAGAAGGGTATTTGATACCATGCATGAGAGAACTGTTATCTCTTGGAATGCAATGCTTGTTGGGTATAGCAAACATGGAGAAGGAAGAGAAGTTCTTGAGCTTTTCACTTTAATGAGAGAAGAAAACAAAGTCAAACCCGATAGTGTTACAATTTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGACTGGAGGACAGGGGACTGGATATTTTTTATGATATGACCAGTGGAAAAATTGGATTTGAGCCTGGGATGGAGCACTATGGGTGTGTTGTTGATTTGCTTGGTCGTGCTGGTCGAGTAGAAGAAGCTTTTGAGTTCATTAAAAAGATGCCTTTTGAACCAACAGCTGCCATATGGGGTTCCCTTTTAGGTGCTTGCAGGGTTCATTCAAATGTTGACATTGGTGAATTTGTGGGTCATCGACTTCTAGAAATTGAGCCTGAAAATGCTGGAAATTATGTTATTTTGTCTAATTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGGGACCTGATGTTGAAGAAGACAGTAATGAAAGAACCTGGAAGAAGTTGGATTGAGCTTGATCAACTACTGCATACTTTCCATGCAAGTGATCGTTCCCATCCAAGAAGAGAAGAAGTATCTGCCAAAGTGAAGGAATTGTCAGTTAGATTTAAAGAAGCTGGTTATGTGCCTGATTTGAGTTGTGTTTTACATGACGTGGATGAAGAGCAGAAGGAGAAAATACTTCTAGGCCACAGTGAAAAGTTGGCTTTGTCTTTTGGGCTAATTTCAACTTCTGAATATGTGCCAATCCGTGTCATAAAAAATCTCCGGATTTGTGTTGATTGCCATAATTTTGCTAAATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCGAATTGTTGGAGGAAAGTGTTCCTGTGGAGATTACTGGTGA 2460 0.4508 MEQTTLDSIQFNEEIQGIMAPAPESASSFTALLELPPTQAVELLHSPERAGKPPHHVSNPTDTRNLTFPSNAALIERAARFSVFAGENSPPPEVKSELPETDSNPSSTQGGGCVSDPVVENKNPKGAKRKEREKKVKVSSKKSKGVADESDGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSILATEGASLMDSNFPTTVAPVAWPEIPHNGNKQQYQQPWQFDAFHQPHWGREEDNPNFMTPENSLLSYDSSANSGRSDISALKSVEDGAVNGYRSCSTEPNEFTFATVLTSCTGSVGSMLGRQIHSLIIKSNYEAHVYVGSSLLDMYAKDGKIHEARSVFECLPERDVVSCTAIISGYAQLGLDEEAMELFRRLQREGMQSNYVTYASVLTALSGLAALDHGKQVHNHVLRSEVPSFVVLQNSLIDMYSKCGNLTYSRRVFDTMHERTVISWNAMLVGYSKHGEGREVLELFTLMREENKVKPDSVTILAVLSGCSHGGLEDRGLDIFYDMTSGKIGFEPGMEHYGCVVDLLGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFVGHRLLEIEPENAGNYVILSNLYASAGRWEDVRSLRDLMLKKTVMKEPGRSWIELDQLLHTFHASDRSHPRREEVSAKVKELSVRFKEAGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLISTSEYVPIRVIKNLRICVDCHNFAKYISKIYGREVSLRDKNRFHRIVGGKCSCGDYW. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04902 819 NCBIfam pentatricopeptide repeat 512 546 IPR002885 -
Seca8g04902 819 NCBIfam pentatricopeptide repeat 411 442 IPR002885 -
Seca8g04902 819 MobiDBLite consensus disorder prediction 99 114 - -
Seca8g04902 819 Pfam PPR repeat 484 509 IPR002885 -
Seca8g04902 819 Pfam PPR repeat 586 610 IPR002885 -
Seca8g04902 819 CDD bHLH_AtBPE_like 158 243 - -
Seca8g04902 819 MobiDBLite consensus disorder prediction 47 67 - -
Seca8g04902 819 Pfam PPR repeat family 408 455 IPR002885 -
Seca8g04902 819 Pfam PPR repeat family 510 558 IPR002885 -
Seca8g04902 819 FunFam Pentatricopeptide (PPR) repeat-containing protein 575 738 - -
Seca8g04902 819 Pfam E motif 629 691 IPR046848 -
Seca8g04902 819 FunFam transcription factor bHLH48-like isoform X1 165 237 - -
Seca8g04902 819 MobiDBLite consensus disorder prediction 138 155 - -
Seca8g04902 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Seca8g04902 819 MobiDBLite consensus disorder prediction 85 155 - -
Seca8g04902 819 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Seca8g04902 819 Pfam DYW family of nucleic acid deaminases 727 819 IPR032867 GO:0008270
Seca8g04902 819 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 237 IPR036638 GO:0046983
Seca8g04902 819 Gene3D Tetratricopeptide repeat domain 331 474 IPR011990 GO:0005515
Seca8g04902 819 Gene3D Tetratricopeptide repeat domain 484 727 IPR011990 GO:0005515
Seca8g04902 819 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Seca8g04902 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Seca8g04902 819 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 465 573 - -
Seca8g04902 819 SMART finulus 174 224 IPR011598 GO:0046983
Seca8g04902 819 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 363 464 - -
Seca8g04902 819 Gene3D - 165 236 IPR036638 GO:0046983
Seca8g04902 819 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 322 424 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04902 Seca-Chr8 135871306 135887519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04902 340 819 Glycoside Hydrolase AT3G49170 41.116 1.16e-126 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04902 DYW_deaminase 4.1e-37 CL0109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04902 - - vun:114190538 888.641