Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04898 ATGGCTACATTCTGTATATACCTATTCCTTTTCTCTCTGACCTTCACATTTCTCAACCTTAGTTCTTCTTCATCAGAGGCTGATATCCTTCTATCCTTCAAGGCCTCCATTGAAGACCCCAAGAAGGCTTTGTCTACTTGGTCCAACACTTCTTCAGCCACCCACTATTGTAACTGGACAGGTATAACTTGCTCCACCACAACTCCACTTTCAGTAACTTCTGTTAACCTTCAAAGCCTCACCCTTTCTGGGGTTTTCTCCTCTTCAATATGTGACCTTCCAAATTTGTCTTACCTCAATCTTGCTAACAACATGTTCAATCAGTCCATACCTCTTCATCTTGCTCACTGCAGTTCCTTGGAAAACTTGAACATCAGTAACAACCTCATATGGGGCTCCATCCCATTGCAGATTTCTCAGCTAGTGTCCTTGAGAGTGCTTGATCTTAGTAGGAACTACATAGAAGGAAACATCCCAGAAAGCTTAGGAACATTGAGGAACCTACAAGTTCTTAGCATGGGGAGTAACTTGCTGTCTGGTAGTGTGCCTGCTATCTTTGGGAATTTCAGTGAGTTATCTGTTCTTGATTTGTCTCAGAATCCAAACTTGGTGAGTGAGATTCCAGAGGATATTGGCCAACTTGGAAGCCTCAAGCAACTTTTGTTTCAGGGGTCTGGTTTTCAAGGTGGAATTCCAGAGTCTTTGGTGGGCCTGCATAGTTTGGTCCATTTGGATCTCTCTGAGAACAGTCTCACTGGTGGGGTTCCTCTGGCTCTGGTCTCTTCTCTCAGGAACTTGGTCTATTTTGATGTTTCACAAAACAAGCTTTTAGGGCCATTTCCAAATGGCTTTTGTAAAGGGAAGGGGCTTATAAATCTCAGTCTTCACACAAATAGCTTCACTGGTTCACTGTCTAACTCCTCCATTGCTGAGTGTAAGAATCTTGAGAGATTTCAAGTTCAGAACAATGGATTTTCTGGAGATTTCCCTGTTGCATTATGGTCATTACCTAAGATTAAGCTTGTCAGAGCTGAAAACAATAAATTCTCAGGACAAATACCCGAGTCCATATCAAGAGCAGTTCAATTAGAGCAAATTCAGCTTGACAACAACAACTTTTCTGGTAAAATTCCTCAAGGTCTTGGACTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCACAACCATATCTATGGTGAACTCCCTTCTAACTTCTGTGATTCCCCAGTGATGAGCATAGTGAATGTCTCACATAATTATCTTTCTGGTCAAATACCAGAGCTGAAAAAATGCAGGAAACTAGTTTCCTTGTCTTTGTCTGATAACAGTTTAATTGGAGAAATTCCCCTATCCCTTGCTGAGCTACCAGTGCTGACTTACCTGGATCTTTCAGATAACAATCTCACTGGCTCAATCCCAGATGGGCTTCAAAATTTGAAGCTTGCACTTTTCAATGTGTCCTTCAATAAGCTATCTGGTAAAGTACCATACTCCTTGGTTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGTCCTGGATTGCCCACTTCATGTTCTGACGACCCTCCAATATACCATTCTGCTGGTAGTCTTACAACTTTGACTTGTGTCCTTATCTCTGCATCTTTTGTTATTGGAACTGCCATAGTTGCCTGTGGAATTTTGTTGTATAAGAGGTCTTGCAAGCATAATCAAATAGGAGTTTGGCGCTCAGTGTTTTTCTATCCTCTTAGAATCACTGAGCATGATCTCCTTGTAGGGATGGATGAGAAAAGCTCAATGGGAAATGGTGGAGTTTTTGGCAAAGTTTATGTGGTAAGTCTACCTAGTGGTGAACTTGTTGCTGTGAAGAAGCTTGTCAATCTTAGAAACCAGTCTTCAAAAAGTTTGAAAAGTGAGGTCAAGACACTAGCCAAAATTAGGCATAAGAATATTGTGAAAATTCTGGGATTCTGCCATTCTGATGAGTCCATTTTTCTTATATATGAACACTTGCATGAGGGAAGCTTAGGGGATTTGATTTCCTGCCAGAATTTTCAGTTGCAATGGGGAGTTAGATTGAGGATTGCCATTGGAGTTGCTCAAGGACTTGCATATCTTCACAACCATTATGTTCCTCACTTGCTTCACAGAAATGTTAAATCAAGGAACATTCTGTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGACCGAGTTGTGGGAGAAGATGCGTTTCAGTCAACCGTTGATTCTCAAGCAGCATCTTCCTGTTACATTGCTCCAGAATATGGCTATAGTAAGAAAGCAACTGAACAATTGGACGTGTACAGCTTTGGTGTAGTATTGCTAGAGCTAGTGACTGGAAGGCAAGCAGAGAAAGCAGAGTCAATGGAGTCCCTTGATATTGATATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCACTAATGGGATACATCCAGTTCTAGACCCTAAAATATCACATACTTGTCAGCAAGAAATGATTGGAGCTTTAGAAATAGCTCTACGTTGCATTTCAGTGGTGCCTGAGAAGAGGCCATCAATGGTAGAAGTTGTTAAAGCTCTTCAGTCACTTGAGTCAAGGACATGCACTGAAAATTTACAGGATCCAATTGAGGAATTTTCAGTTCCAATATGA 2664 0.4125 MATFCIYLFLFSLTFTFLNLSSSSSEADILLSFKASIEDPKKALSTWSNTSSATHYCNWTGITCSTTTPLSVTSVNLQSLTLSGVFSSSICDLPNLSYLNLANNMFNQSIPLHLAHCSSLENLNISNNLIWGSIPLQISQLVSLRVLDLSRNYIEGNIPESLGTLRNLQVLSMGSNLLSGSVPAIFGNFSELSVLDLSQNPNLVSEIPEDIGQLGSLKQLLFQGSGFQGGIPESLVGLHSLVHLDLSENSLTGGVPLALVSSLRNLVYFDVSQNKLLGPFPNGFCKGKGLINLSLHTNSFTGSLSNSSIAECKNLERFQVQNNGFSGDFPVALWSLPKIKLVRAENNKFSGQIPESISRAVQLEQIQLDNNNFSGKIPQGLGLVKSLYRFSASHNHIYGELPSNFCDSPVMSIVNVSHNYLSGQIPELKKCRKLVSLSLSDNSLIGEIPLSLAELPVLTYLDLSDNNLTGSIPDGLQNLKLALFNVSFNKLSGKVPYSLVSGLPASFLEGNPGLCGPGLPTSCSDDPPIYHSAGSLTTLTCVLISASFVIGTAIVACGILLYKRSCKHNQIGVWRSVFFYPLRITEHDLLVGMDEKSSMGNGGVFGKVYVVSLPSGELVAVKKLVNLRNQSSKSLKSEVKTLAKIRHKNIVKILGFCHSDESIFLIYEHLHEGSLGDLISCQNFQLQWGVRLRIAIGVAQGLAYLHNHYVPHLLHRNVKSRNILLDANFEPKLTDFALDRVVGEDAFQSTVDSQAASSCYIAPEYGYSKKATEQLDVYSFGVVLLELVTGRQAEKAESMESLDIDIVKWVRRKVNITNGIHPVLDPKISHTCQQEMIGALEIALRCISVVPEKRPSMVEVVKALQSLESRTCTENLQDPIEEFSVPI. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04898 887 FunFam Leucine-rich repeat family protein 25 183 - -
Seca8g04898 887 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 261 526 - -
Seca8g04898 887 Pfam Leucine Rich Repeat 458 479 IPR001611 GO:0005515
Seca8g04898 887 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515
Seca8g04898 887 SUPERFAMILY L domain-like 23 302 - -
Seca8g04898 887 Gene3D Transferase(Phosphotransferase) domain 1 670 882 - -
Seca8g04898 887 Gene3D Ribonuclease Inhibitor 185 261 IPR032675 -
Seca8g04898 887 Gene3D Ribonuclease Inhibitor 262 528 IPR032675 -
Seca8g04898 887 Pfam Leucine rich repeat N-terminal domain 24 65 IPR013210 -
Seca8g04898 887 ProSiteProfiles Protein kinase domain profile. 594 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04898 887 CDD STKc_IRAK 599 867 - -
Seca8g04898 887 SMART LRR_typ_2 165 188 IPR003591 -
Seca8g04898 887 SMART LRR_typ_2 141 163 IPR003591 -
Seca8g04898 887 SMART LRR_typ_2 189 214 IPR003591 -
Seca8g04898 887 SMART LRR_typ_2 93 117 IPR003591 -
Seca8g04898 887 SMART LRR_typ_2 455 478 IPR003591 -
Seca8g04898 887 SMART LRR_typ_2 238 261 IPR003591 -
Seca8g04898 887 Pfam Protein kinase domain 596 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04898 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 872 - -
Seca8g04898 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 866 - -
Seca8g04898 887 Gene3D Phosphorylase Kinase; domain 1 588 669 - -
Seca8g04898 887 SUPERFAMILY Protein kinase-like (PK-like) 602 864 IPR011009 -
Seca8g04898 887 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 584 669 - -
Seca8g04898 887 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Seca8g04898 887 SUPERFAMILY L domain-like 203 523 - -
Seca8g04898 887 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04898 Seca-Chr8 135759979 135763270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04898 30 867 Receptor kinase-like Gene Family AT5G06940 62.545 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g04898 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04898 - - gmx:100794428 1382.08