Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g04898 | ATGGCTACATTCTGTATATACCTATTCCTTTTCTCTCTGACCTTCACATTTCTCAACCTTAGTTCTTCTTCATCAGAGGCTGATATCCTTCTATCCTTCAAGGCCTCCATTGAAGACCCCAAGAAGGCTTTGTCTACTTGGTCCAACACTTCTTCAGCCACCCACTATTGTAACTGGACAGGTATAACTTGCTCCACCACAACTCCACTTTCAGTAACTTCTGTTAACCTTCAAAGCCTCACCCTTTCTGGGGTTTTCTCCTCTTCAATATGTGACCTTCCAAATTTGTCTTACCTCAATCTTGCTAACAACATGTTCAATCAGTCCATACCTCTTCATCTTGCTCACTGCAGTTCCTTGGAAAACTTGAACATCAGTAACAACCTCATATGGGGCTCCATCCCATTGCAGATTTCTCAGCTAGTGTCCTTGAGAGTGCTTGATCTTAGTAGGAACTACATAGAAGGAAACATCCCAGAAAGCTTAGGAACATTGAGGAACCTACAAGTTCTTAGCATGGGGAGTAACTTGCTGTCTGGTAGTGTGCCTGCTATCTTTGGGAATTTCAGTGAGTTATCTGTTCTTGATTTGTCTCAGAATCCAAACTTGGTGAGTGAGATTCCAGAGGATATTGGCCAACTTGGAAGCCTCAAGCAACTTTTGTTTCAGGGGTCTGGTTTTCAAGGTGGAATTCCAGAGTCTTTGGTGGGCCTGCATAGTTTGGTCCATTTGGATCTCTCTGAGAACAGTCTCACTGGTGGGGTTCCTCTGGCTCTGGTCTCTTCTCTCAGGAACTTGGTCTATTTTGATGTTTCACAAAACAAGCTTTTAGGGCCATTTCCAAATGGCTTTTGTAAAGGGAAGGGGCTTATAAATCTCAGTCTTCACACAAATAGCTTCACTGGTTCACTGTCTAACTCCTCCATTGCTGAGTGTAAGAATCTTGAGAGATTTCAAGTTCAGAACAATGGATTTTCTGGAGATTTCCCTGTTGCATTATGGTCATTACCTAAGATTAAGCTTGTCAGAGCTGAAAACAATAAATTCTCAGGACAAATACCCGAGTCCATATCAAGAGCAGTTCAATTAGAGCAAATTCAGCTTGACAACAACAACTTTTCTGGTAAAATTCCTCAAGGTCTTGGACTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCACAACCATATCTATGGTGAACTCCCTTCTAACTTCTGTGATTCCCCAGTGATGAGCATAGTGAATGTCTCACATAATTATCTTTCTGGTCAAATACCAGAGCTGAAAAAATGCAGGAAACTAGTTTCCTTGTCTTTGTCTGATAACAGTTTAATTGGAGAAATTCCCCTATCCCTTGCTGAGCTACCAGTGCTGACTTACCTGGATCTTTCAGATAACAATCTCACTGGCTCAATCCCAGATGGGCTTCAAAATTTGAAGCTTGCACTTTTCAATGTGTCCTTCAATAAGCTATCTGGTAAAGTACCATACTCCTTGGTTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGTCCTGGATTGCCCACTTCATGTTCTGACGACCCTCCAATATACCATTCTGCTGGTAGTCTTACAACTTTGACTTGTGTCCTTATCTCTGCATCTTTTGTTATTGGAACTGCCATAGTTGCCTGTGGAATTTTGTTGTATAAGAGGTCTTGCAAGCATAATCAAATAGGAGTTTGGCGCTCAGTGTTTTTCTATCCTCTTAGAATCACTGAGCATGATCTCCTTGTAGGGATGGATGAGAAAAGCTCAATGGGAAATGGTGGAGTTTTTGGCAAAGTTTATGTGGTAAGTCTACCTAGTGGTGAACTTGTTGCTGTGAAGAAGCTTGTCAATCTTAGAAACCAGTCTTCAAAAAGTTTGAAAAGTGAGGTCAAGACACTAGCCAAAATTAGGCATAAGAATATTGTGAAAATTCTGGGATTCTGCCATTCTGATGAGTCCATTTTTCTTATATATGAACACTTGCATGAGGGAAGCTTAGGGGATTTGATTTCCTGCCAGAATTTTCAGTTGCAATGGGGAGTTAGATTGAGGATTGCCATTGGAGTTGCTCAAGGACTTGCATATCTTCACAACCATTATGTTCCTCACTTGCTTCACAGAAATGTTAAATCAAGGAACATTCTGTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGACCGAGTTGTGGGAGAAGATGCGTTTCAGTCAACCGTTGATTCTCAAGCAGCATCTTCCTGTTACATTGCTCCAGAATATGGCTATAGTAAGAAAGCAACTGAACAATTGGACGTGTACAGCTTTGGTGTAGTATTGCTAGAGCTAGTGACTGGAAGGCAAGCAGAGAAAGCAGAGTCAATGGAGTCCCTTGATATTGATATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCACTAATGGGATACATCCAGTTCTAGACCCTAAAATATCACATACTTGTCAGCAAGAAATGATTGGAGCTTTAGAAATAGCTCTACGTTGCATTTCAGTGGTGCCTGAGAAGAGGCCATCAATGGTAGAAGTTGTTAAAGCTCTTCAGTCACTTGAGTCAAGGACATGCACTGAAAATTTACAGGATCCAATTGAGGAATTTTCAGTTCCAATATGA | 2664 | 0.4125 | MATFCIYLFLFSLTFTFLNLSSSSSEADILLSFKASIEDPKKALSTWSNTSSATHYCNWTGITCSTTTPLSVTSVNLQSLTLSGVFSSSICDLPNLSYLNLANNMFNQSIPLHLAHCSSLENLNISNNLIWGSIPLQISQLVSLRVLDLSRNYIEGNIPESLGTLRNLQVLSMGSNLLSGSVPAIFGNFSELSVLDLSQNPNLVSEIPEDIGQLGSLKQLLFQGSGFQGGIPESLVGLHSLVHLDLSENSLTGGVPLALVSSLRNLVYFDVSQNKLLGPFPNGFCKGKGLINLSLHTNSFTGSLSNSSIAECKNLERFQVQNNGFSGDFPVALWSLPKIKLVRAENNKFSGQIPESISRAVQLEQIQLDNNNFSGKIPQGLGLVKSLYRFSASHNHIYGELPSNFCDSPVMSIVNVSHNYLSGQIPELKKCRKLVSLSLSDNSLIGEIPLSLAELPVLTYLDLSDNNLTGSIPDGLQNLKLALFNVSFNKLSGKVPYSLVSGLPASFLEGNPGLCGPGLPTSCSDDPPIYHSAGSLTTLTCVLISASFVIGTAIVACGILLYKRSCKHNQIGVWRSVFFYPLRITEHDLLVGMDEKSSMGNGGVFGKVYVVSLPSGELVAVKKLVNLRNQSSKSLKSEVKTLAKIRHKNIVKILGFCHSDESIFLIYEHLHEGSLGDLISCQNFQLQWGVRLRIAIGVAQGLAYLHNHYVPHLLHRNVKSRNILLDANFEPKLTDFALDRVVGEDAFQSTVDSQAASSCYIAPEYGYSKKATEQLDVYSFGVVLLELVTGRQAEKAESMESLDIDIVKWVRRKVNITNGIHPVLDPKISHTCQQEMIGALEIALRCISVVPEKRPSMVEVVKALQSLESRTCTENLQDPIEEFSVPI. | 888 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g04898 | 887 | FunFam | Leucine-rich repeat family protein | 25 | 183 | - | - | |
Seca8g04898 | 887 | FunFam | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 | 261 | 526 | - | - | |
Seca8g04898 | 887 | Pfam | Leucine Rich Repeat | 458 | 479 | IPR001611 | GO:0005515 | |
Seca8g04898 | 887 | Pfam | Leucine Rich Repeat | 143 | 163 | IPR001611 | GO:0005515 | |
Seca8g04898 | 887 | SUPERFAMILY | L domain-like | 23 | 302 | - | - | |
Seca8g04898 | 887 | Gene3D | Transferase(Phosphotransferase) domain 1 | 670 | 882 | - | - | |
Seca8g04898 | 887 | Gene3D | Ribonuclease Inhibitor | 185 | 261 | IPR032675 | - | |
Seca8g04898 | 887 | Gene3D | Ribonuclease Inhibitor | 262 | 528 | IPR032675 | - | |
Seca8g04898 | 887 | Pfam | Leucine rich repeat N-terminal domain | 24 | 65 | IPR013210 | - | |
Seca8g04898 | 887 | ProSiteProfiles | Protein kinase domain profile. | 594 | 867 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g04898 | 887 | CDD | STKc_IRAK | 599 | 867 | - | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 165 | 188 | IPR003591 | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 141 | 163 | IPR003591 | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 189 | 214 | IPR003591 | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 93 | 117 | IPR003591 | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 455 | 478 | IPR003591 | - | |
Seca8g04898 | 887 | SMART | LRR_typ_2 | 238 | 261 | IPR003591 | - | |
Seca8g04898 | 887 | Pfam | Protein kinase domain | 596 | 862 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca8g04898 | 887 | FunFam | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 | 670 | 872 | - | - | |
Seca8g04898 | 887 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 9 | 866 | - | - | |
Seca8g04898 | 887 | Gene3D | Phosphorylase Kinase; domain 1 | 588 | 669 | - | - | |
Seca8g04898 | 887 | SUPERFAMILY | Protein kinase-like (PK-like) | 602 | 864 | IPR011009 | - | |
Seca8g04898 | 887 | FunFam | probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 | 584 | 669 | - | - | |
Seca8g04898 | 887 | ProSiteProfiles | Leucine-rich repeat profile. | 457 | 480 | IPR001611 | GO:0005515 | |
Seca8g04898 | 887 | SUPERFAMILY | L domain-like | 203 | 523 | - | - | |
Seca8g04898 | 887 | Gene3D | Ribonuclease Inhibitor | 23 | 184 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g04898 | Seca-Chr8 | 135759979 | 135763270 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g04898 | 30 | 867 | Receptor kinase-like Gene Family | AT5G06940 | 62.545 | 0.0 | 1008 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca8g04898 | Pkinase | 3.3e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g04898 | - | - | gmx:100794428 | 1382.08 |