Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04896 ATGACTCAATTGTTGCTAGCTGTGGACTACCTGCACTCCAATCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTGACACAGATGACCTTTCTTCCTCGGTTGTCAGAACTCCAAACTACATGTGTCCTGAGATCCTTGCTGATATGCCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCTTTTCGTGCTCCGGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCACTGCCAATTGTTTACTCTTCAACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACTGCAGCTGAATTGTTAAGGCATTCTCATTTACAACCTTTTGTTCTCCGCTGTCGTAATGCATCATCTGTTTTTCTACCAGTGCATCTGATTAGTAGCCCAAAGGATAAAATTAAAAAATCTTACAATTCTAATGGTGACAAAGACCATAGGGACAAAGAAGCAGGATTAATGAATCATTTGGAGCGTGTTTATCCAATTCAGGGAAATGGAGATGTACAAACAAGCAACCGGCATAGTGATGGCAAGCTCGCTGTGTCAACCAGCACAGAAGAGTGCCTTGAGACTAAAATGGTTGATCCTACCAGCTACACTATGGAATTCTCTACTAGTATTAGTGGGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAAGTAGAGCTGCAAGGGACACAGCTGACAGTGAGATCACTTCAAAGAGCACACTAGATTCTGTACATGAAAAACAAGTATTTGCTGCTGAACATTTTCAGAAGTCATATGCGATTGACATAAATGCAGTGACTAAAAAAGTTGAAGATACTTCTTCCAATGAAGGTTTTGATAAAGCTGAAGCACAAAGAGAAGATGCCAAACCTGAGGACTCCAGTAAATCAATTATTTCCAGTGAAGACAGCAATGGCAATGATAAAGATGGGTCCGTTGATGAGATCATATCAAAGAGCACACTAGATTCTGTGCATGAAGAAGTAGAACAAGGATTTGCTGCTGAACATTTTCAGAAGCCGGATGTATTGGACATAAATGCAGTGACTACAGAAGTTGAAGGTACTTTTTCCAATGAAGTTTTTGAAAAAGATGAAGAAGATGGAGAAGATGCCGAACCTGAGGAGTCCAGTAAATCAATAATGTCCACTGAAGACAGCACTGGCAATGATAAAGATGGGTCCATTGCTGAGACAACATCAAAGAGCACACTAGATTCTGTTCATGAAAAACAAGGATTTGCTGCTGAACATTTTCAGAAGCCAGATGTGTTTGACATAAATGCAGTGAGTACAAAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGATAAAGTTGAAGTACAGGAAGAAGATGCCGAACCTGAGGATTCCAGTAAACCAATAATGTCCAGTGAAGACAGCAGAAGCAATGATAAAGATGGGTCCATTGATGCAGAAAAGTCATCACCAATTGTACATCCTGTTAGGGTTGAGCATGACACTGAAGCTGAAAGCTGCTTAAAGGAAAGTGAAAACCCTGAAGCATTCACAGAAGGCTTATTACAGTCACACAAGGACAACTTGATTTCTGAGAGTAATGATACACTTCCAGGTAAGGATGAAGGCACAGCAAACACACACATAATCAGTTGTTCCACACATAAAGATGGTAATGCCATTGTGGTTGATAAGACACCAAATGGCATGTCATCAAGTACACATATTTCAGTAGGTGGTGATAAAACAAAGAGGGTGTTGGGTGATTCCTGCCAACAAAGAGCTGATGCTCTGGAATCCTTGCTTGAATTATGTGCTCATCTACTTAAACAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAAAGCCTCATCTCCTCACAAAAATTTAATCAGGAAACCTAG 2079 0.404 MTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLDTDDLSSSVVRTPNYMCPEILADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHSHLQPFVLRCRNASSVFLPVHLISSPKDKIKKSYNSNGDKDHRDKEAGLMNHLERVYPIQGNGDVQTSNRHSDGKLAVSTSTEECLETKMVDPTSYTMEFSTSISGSTTSESTICSVCKEADFKSRAARDTADSEITSKSTLDSVHEKQVFAAEHFQKSYAIDINAVTKKVEDTSSNEGFDKAEAQREDAKPEDSSKSIISSEDSNGNDKDGSVDEIISKSTLDSVHEEVEQGFAAEHFQKPDVLDINAVTTEVEGTFSNEVFEKDEEDGEDAEPEESSKSIMSTEDSTGNDKDGSIAETTSKSTLDSVHEKQGFAAEHFQKPDVFDINAVSTKVEGTFSNEGFDKVEVQEEDAEPEDSSKPIMSSEDSRSNDKDGSIDAEKSSPIVHPVRVEHDTEAESCLKESENPEAFTEGLLQSHKDNLISESNDTLPGKDEGTANTHIISCSTHKDGNAIVVDKTPNGMSSSTHISVGGDKTKRVLGDSCQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDAVSSRETAIWLTKSLISSQKFNQET. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04896 692 ProSiteProfiles Protein kinase domain profile. 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04896 692 MobiDBLite consensus disorder prediction 502 545 - -
Seca8g04896 692 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 2 643 - -
Seca8g04896 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Seca8g04896 692 SUPERFAMILY Protein kinase-like (PK-like) 1 171 IPR011009 -
Seca8g04896 692 MobiDBLite consensus disorder prediction 354 375 - -
Seca8g04896 692 MobiDBLite consensus disorder prediction 402 469 - -
Seca8g04896 692 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04896 692 MobiDBLite consensus disorder prediction 317 375 - -
Seca8g04896 692 MobiDBLite consensus disorder prediction 428 455 - -
Seca8g04896 692 MobiDBLite consensus disorder prediction 320 344 - -
Seca8g04896 692 MobiDBLite consensus disorder prediction 484 545 - -
Seca8g04896 692 Pfam Protein kinase domain 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04896 692 Gene3D Transferase(Phosphotransferase) domain 1 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04896 Seca-Chr8 135673227 135681731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04896 3 155 MAP Kinase Kinase Kinase AT4G08500 38.462 1.68e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca8g04896 Pkinase 9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04896 K08857 - gmx:100818558 724.931