Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04891 ATGGCAGACCCTTATTCCAATTTCTTCTCCTCACCCTCAGCTAATTTCTTCCAATTCAATCCCACTCACCACCATTACCCTTCTAATCCATCCCCTTCTCCCTATCTCCACAACTTCATCAACCAAACCACCACCACCACCACCAACAACACCTTTTTCCACTACCACCACCACCACCACCTTCAAAGCACCACCACTGCATCTTCCTCTTCTTATTCCTCACCCCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTTCTGAGCCTCATCCCAACAAAGCAAGAGGAATATGAAGAGCAAGAACAAGAGGATCATCATCAATCTTGCACTCCCATGATGGATGTGGAAGAGGACTGCAGGATCCTCCACCATAGTAAGCCCAAAGAGGAACAACAACATCATTATCATCATGAGGAGGAAGATGCAGAAGAAGAAGCTTCTGCTTCTGCTGCTTCTGTTACTGTTGCACTTCACATAGGGTTACCAAGCCCTAGTGCTGCTGAGATGGCATCTGTGCTTTCTTCTTCCTCTGAGATTATCACTGAAAGAGAACAATTAGGAGATGGTAGCACTGAGGATTCTGGGTTCTTGCCTAATAGACTCAACAAAGGCCAATACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGAACCCAACCAACAGGTATGCTTAGACTTCCTTGCTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAGGATTTTAGGACCCTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGGGATTGGAGAACCCATGAAAAGAACTGTGGCAAGCTTTGGTACTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATAAAAGCTTTTGGGAGTGGCCATGGAGCTTATGGGGTTGATGGCTTTGAAGAAGAAGAAGAGCCAGCATCTGAAGTAGAACAAGACAATGACTCCACCCAGTAA 1149 0.4587 MADPYSNFFSSPSANFFQFNPTHHHYPSNPSPSPYLHNFINQTTTTTTNNTFFHYHHHHHLQSTTTASSSSYSSPPSPPLREALPLLSLIPTKQEEYEEQEQEDHHQSCTPMMDVEEDCRILHHSKPKEEQQHHYHHEEEDAEEEASASAASVTVALHIGLPSPSAAEMASVLSSSSEIITEREQLGDGSTEDSGFLPNRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHGAYGVDGFEEEEEPASEVEQDNDSTQ. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04891 382 PANTHER ZINC FINGER PROTEIN WIP2 46 378 IPR043584 GO:0003700|GO:0010468
Seca8g04891 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Seca8g04891 382 FunFam zinc finger protein WIP2-like 220 243 - -
Seca8g04891 382 Gene3D Classic Zinc Finger 282 357 - -
Seca8g04891 382 Gene3D Classic Zinc Finger 220 243 - -
Seca8g04891 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 325 IPR013087 -
Seca8g04891 382 SUPERFAMILY beta-beta-alpha zinc fingers 290 325 IPR036236 -
Seca8g04891 382 MobiDBLite consensus disorder prediction 361 382 - -
Seca8g04891 382 MobiDBLite consensus disorder prediction 127 150 - -
Seca8g04891 382 MobiDBLite consensus disorder prediction 364 382 - -
Seca8g04891 382 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Seca8g04891 382 FunFam Zinc finger protein WIP2 274 356 - -
Seca8g04891 382 SMART c2h2final6 221 243 IPR013087 -
Seca8g04891 382 SMART c2h2final6 305 325 IPR013087 -
Seca8g04891 382 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04891 Seca-Chr8 135470815 135473338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04891 1 379 C2H2 Transcription Factor Family AT3G57670 58.722 1.94e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g04891 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04891 - - gmx:100813583 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04891 8 135470815 135473338 Seca8g04891 8 135470815 135473338 ECH
Seca8g04891 8 135470815 135473338 Seca4g03757 4 65893963 65896452 ECH
Seca8g04891 8 135470815 135473338 Seca2g04077 2 123308581 123310614 PCT