Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04885 ATGGGTGATGATGATGAGCCATCTGTATCCTCCTCAGCACTTCCATGGTTTTGGGTCACCGAAGCCCTAGCAGGTTTCAGGGAAATCTCCACATCCACATTACAGGATTTGGTTGATGCAGCCCCTGTAGGACCTGGTGATTTTGGTGAAAATGCAAGAGAATCGGTTGCTATGAGGTGTTTGGAGGAACTGTCTGCTATTTCTGCTCGTGGGGTTAATCTTGATGCTTCTTCTGCATTGGATTCAAGAGTTCGATTTGATTTTTCACGTAGTTGTGAAGATGTCCTCCAAGAAATATTGGATGAGATACCATCATCATCTAATCTGAAAATGGCTGGAGCAGAGCTTTTGAAATGGGATATTTACCCATTTGTTATGCACAAAAGAGCTGGCACTATTAAATGTTACTTAAAACAGCTGAAGGAATCAATCTTGGAAGGTACTCAGCCACTTACTGATTACTTAAAAGAAAGGAGTGGATTATTCCGGAGGACTACAGGTTATACAGTGGATGTGAATGATGGCAATTGCAATGATAATTCAGCAAAGGATGATGGGAACTCCACTTATGTAGAAAACATGGGAGCAAAAGAGAGCTCAGTGTCCTTAACTTTAGAGGATGGGAACAAATCTTCAAAAGAGCACTTACCTGATAATAATATTTTACCGTCTAAGAGGAATAGGGTTGACTCAGCTGATAAGCATATTATGAGATGCCTTCATGAAAAACAAGTTTGTGCAAATGAATCTGATGATTTCGTAAGAAATACAAAGAGGATTAAATGTTACACATCTACAAATCTTGATTCCCAGAAAGAAATGCCGGTTTCTGAAATTGGAAAGGAAGTGTCAGAAAAATCAACTGATTTTTTTTTTCAGATTTCCGAGAAAGGAGGGCATCACACAGAAAAGAATAACAGGGTAACTCTGAGTGATGAATCCTTAGAGGATAGTCACATTAGGTACACTGCTTCAAATTTGTGCCAATCCAGCAGTCATAATGAAGTCGTTTATAATGAATCAAATACTCCTTTTAATGATTCTGAGGTGCCTCAGCATACATTTGGAGGTGAAAATTCTCAGCAACAGCAGGTTGAGTTAATTCCAACAGATGTTATACTCCCAGATGGAATTCCACATAAAATTTCTGGAAGTAAACCCTGGTCTAAACATGAAAATTTACAACTCAAAGATTCAAATGGCTCTCAGCAGACAGATGCCAGTGATAAAGCTCAAGATGATACTGGTAATGGTTGTGTGGTAGAGATGTCAGGTGATAAAATTGTGTATCAAGGTGAAAAAAATATATGCGGAAGGAAAAAGCATGAAGAGCTTGGTATGGAGTGTAGCGAAGGTGGTCAATTACAGGTTTGTGAAGCGACTACTGTCCCACTAGTGGTTCCTGAAAGTTGTCTTGTTGTGACAACTAACACTTATCCTCCACATAGATCTGGAATTGAACCTTGCCCTATGGATGCAACCAATGATACTACTATACATGTTGAGCCCATTCCAACAAATGACGATAATGCAAATAAAATTCAGCATATGATTAATGAATCCAAGCCTAAACAGGGGGAACCAAATGTTGCATCTTTAAATGCCTCTCAGAAGCCAGTTTCTAGTGATAAAACTGTAGTTGATGTGTCTCACAATGAAAAGATTGATCTTGCAGCCAAAAAGCATGACACAAATGATCAAGATTTGTCAGCAATGACTGAGTCAACTGAACAAAATCTTTGCATGAAGTGTAATGAAGGCGGCCAATTACTGGCTTGTAAAACAAGGTCTTGCTCAATGATGATACATAAAAACTGTCTGGGTGAATCTGCTCAGTTGGATGCAAAGGGAAACTTTTTCTGCCCATTTTGTGCATATTCTCACACTATTTCAGAATATCTTGAAGCCAAGAAAAAAGCTTCCTTGGCAAGGAAAGAATTAGCTATCTTCATTAGTAAGGGTATAAGGAATCAAGCCACAGAACATGTTCATGAATTTGGTCGACAAGAACATACTCTTTCAAGAAAGAGTGATCAGTGTGAGCATATTCATCTCGAAAAGAAAGAAAATGATCCATTAACAGGGTATGATGAAAATAGAGTAGATCATGTTGGTAAGCCTGCAAATGAAGTTAAAAATCTTCAGTTTGAAAGAAGTGAGCAACAAGTCCCTATATCATATGTCTATTCATCATGCAGAGAGAAGGAAAATGTAAATAATGGAATAACAGATGATGTAAGAAGAGAAGAGGATGGGGGCGAAATGGCAAATTCAAAGAGCTTAACTGGTGGAAGGGTTGAAGAAAAAGAAGTGCCAACTAACCATGTAGATGGACACGGTGGTGATAAATTTTCTTGTAGAAAAGCAAATATTTTATCTGCTAATAAAAGCAATGCTCGAGAAGTTCCACAAAATATGACAAAACAACACAATATGGATGGAACAGTAAAGCCAGTTTGTGCACATGATCCTGGAAAAGAGGACATTTCTGAAGATGAATGTGAAAAGCATATCAGTTCTAGTTCTAGATACTCCATGAGATACCGCTGGCTTTCATCCTCTTGGTCTCATTTGATGCCAAGCAGAGATAATGGCCGATCAACTTCCAAAGGAAGATGGAGGAAGACAGCAGAGGAAGGCAAGAAAGACTATGTGGTAATGTATCACTCCCAACTCAAAATTCCTGGGAATGCAAGAATAACTCATGAACCAAATGCCCCCTCGTGTTTGATGGACTGGAACTATTATGCTCATTCTAATTTGATTGGTATTTTGACTTACAGCAAACCCCAAGCATGCCCTCGGATAAGGCGAAGGGCAATTCCATGGACAGATGAGGAGGAAGAGCTGTTAAGGGAGGGAATGCAGAAGTTTGGTTCCAATGACCCAAAAATCCCATGGAAGAAAATTTTGGCATTCGGTTCTCATGTGTTTGAGAAGAATGATAAGCGTCGTACACCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCGCTCAAAATCGAAATAA 3018 0.391 MGDDDEPSVSSSALPWFWVTEALAGFREISTSTLQDLVDAAPVGPGDFGENARESVAMRCLEELSAISARGVNLDASSALDSRVRFDFSRSCEDVLQEILDEIPSSSNLKMAGAELLKWDIYPFVMHKRAGTIKCYLKQLKESILEGTQPLTDYLKERSGLFRRTTGYTVDVNDGNCNDNSAKDDGNSTYVENMGAKESSVSLTLEDGNKSSKEHLPDNNILPSKRNRVDSADKHIMRCLHEKQVCANESDDFVRNTKRIKCYTSTNLDSQKEMPVSEIGKEVSEKSTDFFFQISEKGGHHTEKNNRVTLSDESLEDSHIRYTASNLCQSSSHNEVVYNESNTPFNDSEVPQHTFGGENSQQQQVELIPTDVILPDGIPHKISGSKPWSKHENLQLKDSNGSQQTDASDKAQDDTGNGCVVEMSGDKIVYQGEKNICGRKKHEELGMECSEGGQLQVCEATTVPLVVPESCLVVTTNTYPPHRSGIEPCPMDATNDTTIHVEPIPTNDDNANKIQHMINESKPKQGEPNVASLNASQKPVSSDKTVVDVSHNEKIDLAAKKHDTNDQDLSAMTESTEQNLCMKCNEGGQLLACKTRSCSMMIHKNCLGESAQLDAKGNFFCPFCAYSHTISEYLEAKKKASLARKELAIFISKGIRNQATEHVHEFGRQEHTLSRKSDQCEHIHLEKKENDPLTGYDENRVDHVGKPANEVKNLQFERSEQQVPISYVYSSCREKENVNNGITDDVRREEDGGEMANSKSLTGGRVEEKEVPTNHVDGHGGDKFSCRKANILSANKSNAREVPQNMTKQHNMDGTVKPVCAHDPGKEDISEDECEKHISSSSRYSMRYRWLSSSWSHLMPSRDNGRSTSKGRWRKTAEEGKKDYVVMYHSQLKIPGNARITHEPNAPSCLMDWNYYAHSNLIGILTYSKPQACPRIRRRAIPWTDEEEELLREGMQKFGSNDPKIPWKKILAFGSHVFEKNDKRRTPQDLKDKWKNMCKARSKSK. 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04885 1005 MobiDBLite consensus disorder prediction 394 412 - -
Seca8g04885 1005 SUPERFAMILY FYVE/PHD zinc finger 574 628 IPR011011 -
Seca8g04885 1005 SUPERFAMILY Homeodomain-like 942 1003 IPR009057 -
Seca8g04885 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 670 IPR013083 -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 744 784 - -
Seca8g04885 1005 ProSiteProfiles Zinc finger PHD-type profile. 578 627 IPR019787 -
Seca8g04885 1005 SMART sant 939 1000 IPR001005 -
Seca8g04885 1005 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 512 1001 - -
Seca8g04885 1005 Gene3D - 934 1001 - -
Seca8g04885 1005 SMART PHD_3 580 625 IPR001965 -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 982 999 - -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 763 784 - -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 378 417 - -
Seca8g04885 1005 Pfam Myb-like DNA-binding domain 943 1001 - -
Seca8g04885 1005 CDD SANT_TRF 941 999 - -
Seca8g04885 1005 ProSiteProfiles Myb-like domain profile. 935 998 IPR001005 -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 982 1005 - -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 522 546 - -
Seca8g04885 1005 MobiDBLite consensus disorder prediction 525 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04885 Seca-Chr8 135298151 135305335 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g04885 Myb_DNA-bind_6 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04885 - - ccaj:109810464 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04885 8 135298151 135305335 Seca8g04885 8 135298151 135305335 ECH