Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04880 ATGGCCGAATCAATCCTCTTTAACGTTGCAGAGTCCTTCATCGGGAAGCTTGCTTCTGGTGCTGTTGAAGAAGCTTCTCTAGCACTCGGTGTGTATGACGATCTGCAAGAGATCAAAGACATCGTCTCATTCATCAAAGCTGTGCTGTTGGACGCTGAGCAAAAGCAGCAGAAGAACCACGAGTTGCGTGAATGGCTGAGACAGATTAAGCGTGTCTTCTCCATTGCCGAAGACATAATCGATGATTTCGAGTGTGAGGCATTACGGAAGAAAGTGGTCAAAGCTTCTGGTAGCTTTACAAGGAAGGTACGTCGTTTCTTCTCAAGTTCTAATCCTCTCGTTTACCGTTTTAGAATGTCACATCAGATTAAAGACATTAAAGAGAGATTAGACAAGGTTGCAGCTCGTAGGAATAATTTTAGCCTTCAAATCAATGATAGTGATAATCGTGTTGTGCAAAGGCGGGAATTGACTCATTCCCATGTAATTGATTCAGATGTTATAGGAAGGGAACATGACAAAGAAAAAGTCATTAAGCTCTTATTGCAAGATGATGATGATGATGATGATAAAGGTCTCTCTGTTATTCCCATTGTGGGAATAGGAGGCTTGGGAAAGACAACACTTGCAAAGTCCTTGTTCAATGATAAGAGTGTGCGTGAGTCTTTCCAAAGGAGGATGTGGGTGTGTGTCTCTGATGATTTTGAACTTAAGCATTTGCTTGTTAAAATCCTCAATTTTGCTCCTACATCCGCTAATCAAGAGAACTTTAAAAGTTTTAATGTCGAGCAACTACAAAATCATCTTAGAAAAACAATTGTTGATCAAAAGTTTTTGCTCGTCTTGGACGATGTATGGAACGAGGATCGTGTTAAATGGGTTGAGTTCAAGGATTTAATACAAGTAGGTGCCCCTGGAAGTAGAGTCCTAGTGACTACACGTAGCCACACAATTGCTACCATGATGGGCACTAATTCATCATACATCTTGCAAGGTCTTTCTGAAAAGGATTCCTTGTCTGTATTTGTCAAATGGGCTTTTAAGGAAGGGGAAGAGAACAGATATCCAGAATTGTTGGAGATTGGGAAACAAATTGTGCGAAAATGTGGAGGGCTTCCATTGGCCCTAAGGACATTAGGAAGTTCACTATTCTTAAAAGTTGATATGAAAGAGTGGAAGTTTGTTAGGGACAATGAGATTTGGAATTTACCACAAAATGAAAATGATATTTTACCTGCTCTCAAATTAAGTTATGACCAGTTACCTTCATATTTAAAAAGATGTTTTGCTTGCTTCTCCCTATTCGAAAAGGACTTTGATTTTTCTAATTTTAATGTTACTGTGCTTTGGGAGGCACTGGGTTTTCTTCCATCACCAAAGAAAGGTAAAACACTGGAAGATGTTGGTAATCATATTTTGCATGAGCTGCAATCAAGGTCTTTTCTTCAAGATTTTATTAATTATGGCAGTGTTTGCACATTTAAACTTCATGACTTAGTGCAAGATCTCGCAGTGTATGTTGCAGAAGATGAGTTTCAATTGTTGAATACCCCCAATCAGAATATACCTGAGAATATCCTGCACTTGTCATTTAATAAAAGTGATTTGCTTGGCCAAGCTCCCATTCCTGCAGGTCTCAGAACCATACTCTTTCCTATGGGAGCTAACAATGAAACTTTCTTGAATACAGTGGTGACAGAGTGCAAATACTTGCGGGTTCTGGATTTGACTGATTCTGAGTATGAGAACTTGCCCCACACCATTGGTAAGTTGAAACATTTAAGATATATCACTCTTGAGCATAATGAAGAACTTAGGAGACTCCCTGATTCAATATGCAAACTTCAAAATTTGCAAGCTTTGAATCTCATTGGATGCACAAGTCTACAAACATTGCCCAAAGAAATAGGAAACTTGATCAGCCTCCGGCAGCTGCATATAACCACAAATCAATCTAACTTTCCAGACAATGAGATTGCAAAATTGACTTATCTGGAAATTTTATCTTTTATTGATTGTGGCGATTTGGAGTCATTGTTTGAAGGGATACAACTTCCAAGTCTTACATTGTTGAATATTGAGTCTTGTGGGAGTCTAAAGTCATTGCCGCTTCATGTTATTCCAAACTTAGAGAGTTTGATCATTGTAAACTGCCCTAAGTTGGAATTGTCAATGGGTCGTGACAACCAAATCCCTGAGTTAAGGTTAAAGTTGCTATCTCTTGATTCCTTGCCTCAACTGGTGACTTTTCCTCAATGGTTGCAAGGATCTGCCAACACATTACATTCCTTGCGAATCGATGATTGCGACAATCTTGAGGAGCTCCCTAAGTGGCTATTAACTTGGAATTGTTTCAAAACACTCTCAATTAAAAATTGTCCAAAATTGATTTCGCTCCCTGATGATGTGCACCGCCTCCCTAACCTTGAATATTTAGAAATTAAAGGTTGTCCTGAATTATGTAGAAGATGTCTCGGACAAGATTGGCCAAAGATATCGCACATCAAAGAAGTTAGGATTGAATCAGTAGAATCGCAAGATTAA 2544 0.3895 MAESILFNVAESFIGKLASGAVEEASLALGVYDDLQEIKDIVSFIKAVLLDAEQKQQKNHELREWLRQIKRVFSIAEDIIDDFECEALRKKVVKASGSFTRKVRRFFSSSNPLVYRFRMSHQIKDIKERLDKVAARRNNFSLQINDSDNRVVQRRELTHSHVIDSDVIGREHDKEKVIKLLLQDDDDDDDKGLSVIPIVGIGGLGKTTLAKSLFNDKSVRESFQRRMWVCVSDDFELKHLLVKILNFAPTSANQENFKSFNVEQLQNHLRKTIVDQKFLLVLDDVWNEDRVKWVEFKDLIQVGAPGSRVLVTTRSHTIATMMGTNSSYILQGLSEKDSLSVFVKWAFKEGEENRYPELLEIGKQIVRKCGGLPLALRTLGSSLFLKVDMKEWKFVRDNEIWNLPQNENDILPALKLSYDQLPSYLKRCFACFSLFEKDFDFSNFNVTVLWEALGFLPSPKKGKTLEDVGNHILHELQSRSFLQDFINYGSVCTFKLHDLVQDLAVYVAEDEFQLLNTPNQNIPENILHLSFNKSDLLGQAPIPAGLRTILFPMGANNETFLNTVVTECKYLRVLDLTDSEYENLPHTIGKLKHLRYITLEHNEELRRLPDSICKLQNLQALNLIGCTSLQTLPKEIGNLISLRQLHITTNQSNFPDNEIAKLTYLEILSFIDCGDLESLFEGIQLPSLTLLNIESCGSLKSLPLHVIPNLESLIIVNCPKLELSMGRDNQIPELRLKLLSLDSLPQLVTFPQWLQGSANTLHSLRIDDCDNLEELPKWLLTWNCFKTLSIKNCPKLISLPDDVHRLPNLEYLEIKGCPELCRRCLGQDWPKISHIKEVRIESVESQD. 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04880 847 Gene3D - 424 505 IPR036388 -
Seca8g04880 847 Gene3D - 332 422 IPR042197 -
Seca8g04880 847 FunFam Probable disease resistance protein At1g61300 149 327 - -
Seca8g04880 847 Gene3D - 148 330 IPR027417 -
Seca8g04880 847 SUPERFAMILY L domain-like 495 833 - -
Seca8g04880 847 Pfam NB-ARC domain 171 419 IPR002182 GO:0043531
Seca8g04880 847 Pfam Rx N-terminal domain 11 98 IPR041118 -
Seca8g04880 847 PANTHER DISEASE RESISTANCE PROTEIN RP 38 820 IPR044974 GO:0006952
Seca8g04880 847 CDD RX-CC_like 12 134 IPR038005 -
Seca8g04880 847 Gene3D Ribonuclease Inhibitor 732 835 IPR032675 -
Seca8g04880 847 Gene3D Ribonuclease Inhibitor 508 731 IPR032675 -
Seca8g04880 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 431 IPR027417 -
Seca8g04880 847 PRINTS Disease resistance protein signature 613 629 - -
Seca8g04880 847 PRINTS Disease resistance protein signature 369 383 - -
Seca8g04880 847 PRINTS Disease resistance protein signature 195 210 - -
Seca8g04880 847 PRINTS Disease resistance protein signature 272 286 - -
Seca8g04880 847 Gene3D - 10 124 - -
Seca8g04880 847 Pfam Leucine rich repeat 570 625 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04880 Seca-Chr8 135242541 135249612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04880 193 785 WRKY Transcription Factor Family AT5G45050 23.851 1.98e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04880 - - gmx:100780033 1053.12