Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04879 ATGATGGGATTGTTGACCGCTGCCTCGTCGGAGAAGATGTCAGAGAGGAGTGGTCGCATGACAAGGTTTATCATTTTGGAACTGACGGACGACAGGGGCAAGGTTAATTGCACCTTCTTTAGAGATTATGTCGACGTAGTGAACAGTTACCTTGCGAGGGAGAGTGAGGAGCTTCCCGTTGTCGTGGTTCAGCACGCTAGGGTGAAGGCTTACATGGGGGTGGTGTCCATCCAGAATGTGATGAACACGACAACTATAATGTGGAATCCTGACATTCCCGAGGCCATTGAGTTTAAAAGGAGCTTGGCAGAACATGCATTTGAAACTGAGGCTGCGGTTGGGGCGATTGGAGAAGGACACAATGACCTCAGTATGAAGGATGATTTCCTTGGTTTTTATCCCACGAAAACGATTAATGAGCTGCACATGACAGAGGAGGAGGGAAATTTTATAGTCATTGCAATGGTGGCTGCCATACTTGGGGATGATGCATGGTGGTATTCGGCGTGCTCCTGCATGAAAGCTGTGAATGAGGAGGATGGGGTTTTCTTCTGCCCAGCGTGCAAAGCTAATGTTAAGGAAGTTACACCAAGGTTTAAGCTGAAGATTGAGGTCTTTGACGGTGATGACACAGCTGCTTTCATTCTCTTTGACCAAGATGCCCAGTTTCTGTTCGGGAAGACATGTGCTGAATTTGTCGCAGAGGCAAAGAATAAATTTATCCCACCATTCCCCACTCTTGAGGAAGCGAGTTCTAGTGGAACTGTAAAAGGGGCCGAGAAGGAGGTTGTGGATTTGTGTGGCGAGGTGCAGCTGGTTTTAGGAGGTCCTATTAAGGGAGGCAGCGGTGGCGCTATCAGTGAGAATGAAGGGAAATCTAATGCTGAATCATTCCTTGCAGTGGACCCTGTTGTTGCCCCTTTTGCCATGACTGATGTGGTGGACTTGGAGAGTCAAGGGTATGGTGATGTGACCGCGGTGCAAAGTGAGAAACCTTTGGTGGATGAATTTAACCTAAAAAAGAAGAACATGAGGCTCAAGAAGATTAAGATCGAGTGTGAATGA 1065 0.4751 MMGLLTAASSEKMSERSGRMTRFIILELTDDRGKVNCTFFRDYVDVVNSYLARESEELPVVVVQHARVKAYMGVVSIQNVMNTTTIMWNPDIPEAIEFKRSLAEHAFETEAAVGAIGEGHNDLSMKDDFLGFYPTKTINELHMTEEEGNFIVIAMVAAILGDDAWWYSACSCMKAVNEEDGVFFCPACKANVKEVTPRFKLKIEVFDGDDTAAFILFDQDAQFLFGKTCAEFVAEAKNKFIPPFPTLEEASSSGTVKGAEKEVVDLCGEVQLVLGGPIKGGSGGAISENEGKSNAESFLAVDPVVAPFAMTDVVDLESQGYGDVTAVQSEKPLVDEFNLKKKNMRLKKIKIECE. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04879 354 SUPERFAMILY Nucleic acid-binding proteins 132 238 IPR012340 -
Seca8g04879 354 CDD RPA1_DBD_C 136 245 IPR047192 -
Seca8g04879 354 CDD RPA1_DBD_B_like 2 102 - -
Seca8g04879 354 Gene3D - 130 252 IPR012340 -
Seca8g04879 354 Gene3D - 1 111 IPR012340 -
Seca8g04879 354 SUPERFAMILY Nucleic acid-binding proteins 12 103 IPR012340 -
Seca8g04879 354 PANTHER OS03G0429900 PROTEIN 60 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca8g04879 354 Pfam Replication factor-A C terminal domain 150 235 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04879 Seca-Chr8 135236951 135239010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04879 26 232 Core DNA Replication Machinery Family AT5G08020 25.463 1.77e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04879 - - lja:Lj1g3v3385890.1 236.884