Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04873 ATGAACCACTTGACCATTGAGACTGAAGATTCTTTTGCGAGCTTGCTCGAGCTTGCAGCCAATAATGATGTTGAAGGTTTGAAACGAATGATTGAGCGGGATCCTTCCTGTGTAGATGAGGTAGGGCTATGGTACAGTCGTAGGAAGGGCTCAAAGCAGATGGTCAATGAGCTCAGAACACCTTTGATGGTAGCTGCTACTTATGGTAGCATTGATGTTATGAAACTGATTCTTTCACTATCTGATTATGATATTAATAAACCTTGCGGCCTTGACAAGAGCACCGCCCTTCATTGTGCGGCATCAGGTGGAGCTGTAAATGCTGTTGATGTTGTTAATCTGCTTCTAGAAGCAGGGGCTGATCCAAATTCTGTGGATGGCAATGGTCATCGTCCAGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAATTTGTCAAAAGTAGTCTCGAAGAACTTCTTCAAACTGATTACTCCAATGCAGATGCAGGGTGTAATCTTAGGGTGATCACAGCCCCATCAAACACATATTCTCCACCTTTATCAGCTTCACCAGAGAATGGGTCTCCTTCTGCCTCAGATTTCCAGCTGAAGTCAAAGTTAAATGACGTCCCTATTTATTCTACATCAGAGAAGAAAGAATATCCTATTGACCCATCCCTTCCGGATATCAAGAATAGCATATATTCAACTGATGAATTTCGAATGTATTCTTTCAAGGTTCGACCTTGTTCTCGAGCGTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAAAATGCTCGAAGAAGGGACCCTAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTCCGGAAGGGTGCTTGCCGACGTGGTGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCGGCACAATATAGGACACGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCCCACACTGCTGAGGAGCTCAGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGCTCAAGCACTTCTTCTGCAATGGATTTTGCCGCAGCTATGAGCCTGTTACCTGGCTCTCCTTCATCAATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCTATGTCACCCTCTGCCAATGGCATGTCACACTCTTCTGTTGCTTGGCCCCAACCAAATGTCCCAGCCTTGCATCTGCCAGGGAGCAATCTTCATTCCAGTCGATTGAGATCTTCGCTTAATGCTAGAGATATTCCTGCCGATGACTTTGACATGTTGTCTGACTATGATGTTCAGCAACAACAGCTCCTTAATGAGCCTATGAATTCTAATACTATCAATCGCTCTGGCCGGGTGAAATCTCTGACCCCGTCAAATCTTGATGATCTCTTTTCTGCTGAGAGCTCTTCCCCTCGGTTTGCTGATGCAGCATTGGCTTCAGCTGTTTTTTCTCCAACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAACAAAGCTTGCTGTCACCTGTGAATACAAACTTCTCTTCTAAAAATGTTGACCATCCTTTATTGCAGGCCTCTTTTGGTGTTCAAACATCAGGAAGGATGTCTCCACGCAATGTGGAGCCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACATGAGAAGCATCAACAATTTCGTAGCCTTAGCTCTAGGGAACTTGGCTCTGGCTCTGCTACTGCTGGTGCTGGATCCCCAGTCAATTCTTGGTCAAAATGGGGACCCTCCAACAATGAATTTGATTGGGCTGCCAGTGGAGAAGAGTTAGGTAAGCTACGTAGATCATCTTCATTTGAGCTTGGGAATAATGGTGAGGAGCCTGATTTGTCATGGGTTCAGTCACTTGTTAAAGAATCTCCAAATGAGATCAAGGAGAAGCAGGCAACACCTGGCTCAAGTGTTGCAGCGGTTGGATCCTCTGGTAATGGATCAAATATGGGCGCACCAATGGACTCCGTTGATCATGCTGTGTTGGGAGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAATTAA 2088 0.4507 MNHLTIETEDSFASLLELAANNDVEGLKRMIERDPSCVDEVGLWYSRRKGSKQMVNELRTPLMVAATYGSIDVMKLILSLSDYDINKPCGLDKSTALHCAASGGAVNAVDVVNLLLEAGADPNSVDGNGHRPVDVIVVPPKLEFVKSSLEELLQTDYSNADAGCNLRVITAPSNTYSPPLSASPENGSPSASDFQLKSKLNDVPIYSTSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLHSSRLRSSLNARDIPADDFDMLSDYDVQQQQLLNEPMNSNTINRSGRVKSLTPSNLDDLFSAESSSPRFADAALASAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVDHPLLQASFGVQTSGRMSPRNVEPISPMSSRISMLAQHEKHQQFRSLSSRELGSGSATAGAGSPVNSWSKWGPSNNEFDWAASGEELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPNEIKEKQATPGSSVAAVGSSGNGSNMGAPMDSVDHAVLGAWLEQMQLDHLVAQQN. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04873 695 SUPERFAMILY Ankyrin repeat 15 138 IPR036770 -
Seca8g04873 695 MobiDBLite consensus disorder prediction 562 592 - -
Seca8g04873 695 Gene3D - 274 335 - -
Seca8g04873 695 Gene3D - 1 232 IPR036770 -
Seca8g04873 695 PANTHER UNKEMPT FAMILY MEMBER 17 639 IPR045234 -
Seca8g04873 695 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Seca8g04873 695 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Seca8g04873 695 MobiDBLite consensus disorder prediction 645 667 - -
Seca8g04873 695 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Seca8g04873 695 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Seca8g04873 695 SMART ANK_2a 10 39 IPR002110 GO:0005515
Seca8g04873 695 SMART ANK_2a 57 87 IPR002110 GO:0005515
Seca8g04873 695 SMART ANK_2a 92 124 IPR002110 GO:0005515
Seca8g04873 695 MobiDBLite consensus disorder prediction 643 670 - -
Seca8g04873 695 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Seca8g04873 695 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Seca8g04873 695 Pfam Ankyrin repeats (3 copies) 50 126 IPR002110 GO:0005515
Seca8g04873 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04873 Seca-Chr8 135193974 135196082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04873 7 688 C2H2 Transcription Factor Family AT5G12850 53.352 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g04873 Ank_2 2.4e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04873 - - gmx:100813554 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04873 8 135193974 135196082 Seca8g04873 8 135193974 135196082 ECH