Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04865 ATGGAGAAGATGGCACTCACTTTCCAAACCTCTTTCTTCTCCACTACGCTTCCAAAGACCTCTTCTCCACTCTTCTTCTCTAACCAATTACATGGCCTTCCCTTATCTTCTTCTTCAACCGCCACCAAACCAGGCCTGCGATTAGCTTCCAGGAACAACACTACTTTCAGGCCCATCAAATGTTCCGTTTCTGAAGCCACAGAGCCCAAAACTGCCTTAGAGAAGAAGAAGCAATTGGTAAGAAGAGGAGACGTGAGGAACATCGCGATTGTTGCTCATGTTGACCACGGAAAAACAACTCTCGTTGATGCCATGCTGAAACAAACAAAGGTATTTCGTGATAATCAATTTGTACAGGAAAGGATCATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATCACAATACTAAGTAAAAATACATCTGTCTCCTACAAAGACACCAAAATTAATATAATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGCATCTTGAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGCCATTCAGTTGTTGTGGTTGTGAATAAAATAGACAGGCCTTCTGCTCGTCCAGATTTTGTTGTCAATGCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGTCTCCTGAAAATCTGGCAGAAGACCTTGGACCATTGTTTGAAGCCATCATCAGATGCATCCCTGGACCACGTATCAACAAAGATGGCGCACTTCAAATGCTTGTTACAAATATTGAGTACGATGAACATAAAGGGCGTATAGCAATTGGGCGATTGCAAGCTGGGGTTTTAGAAAAAGGCACGGATGTCAGGGTATGTACTTCAGAAGATGCATGTAGATATGGAAGAATTAGTGAACTTTTTGTGTATGACAAATTCAATAGGGTCCCTGCAGAAAGGGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTCGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTCGGCCGTGAGGGAAAATATGTTACCAGTAGGAATCTGAGGGATAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCAGATACATTCGTTGTTAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCACCCAAAGTTATCAACAAGAAGGTCAATGATAAACTGTTGGAACCTTATGAGATTGCAACTGTGGAGGTGCCAGAAGAACACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATACAAGATTCCAACCCGTGGCCTGCTTGGATTGCGGAATGCAATTTTAACAGCTTCCCGAGGGACAGCTATTCTCAACACTATCTTTGATAGCTATGGGCCTTGGGCTGGGGACATCAGTACTCGTGATCAAGGCTCACTGGTTGCTTTTGAGGACGGAACAAGTACCTCTTATGCTATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGCAGAAGTTTATAAAGGTCAAATTGTTGGCATCCATCAACGACCTGGGGACTTGTCCTTGAATGTTTGTAAGAAAAAAGCTGCAACGAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACACCATTGGATTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAGCTAGTAGAGGTCACCCCCCTGAGTATTCGAATGTGCAAGAATCCAAAACTTACAAAGAAATCAAGGTAG 2034 0.4263 MEKMALTFQTSFFSTTLPKTSSPLFFSNQLHGLPLSSSSTATKPGLRLASRNNTTFRPIKCSVSEATEPKTALEKKKQLVRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVSYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNATFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFEAIIRCIPGPRINKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGTDVRVCTSEDACRYGRISELFVYDKFNRVPAERVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDISTRDQGSLVAFEDGTSTSYAISSSQERGQMFIGPGAEVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCKNPKLTKKSR. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04865 677 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 81 253 - -
Seca8g04865 677 NCBIfam translational GTPase TypA/BipA 85 673 IPR006298 GO:0003924|GO:0005525
Seca8g04865 677 CDD BipA_III 385 463 IPR047043 -
Seca8g04865 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 285 IPR027417 -
Seca8g04865 677 Gene3D bipa protein 563 642 IPR042116 -
Seca8g04865 677 CDD BipA_TypA_C 478 557 IPR035651 -
Seca8g04865 677 Pfam Elongation factor Tu GTP binding domain 85 275 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 SUPERFAMILY EF-G C-terminal domain-like 383 467 IPR035647 -
Seca8g04865 677 SUPERFAMILY Translation proteins 231 378 IPR009000 -
Seca8g04865 677 CDD TypA_BipA 84 277 IPR047041 -
Seca8g04865 677 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 124 139 IPR031157 -
Seca8g04865 677 Gene3D - 83 278 IPR027417 -
Seca8g04865 677 Gene3D Elongation Factor G (Translational Gtpase), domain 3 386 669 - -
Seca8g04865 677 SUPERFAMILY EF-G C-terminal domain-like 478 593 IPR035647 -
Seca8g04865 677 Pfam Elongation factor G C-terminus 476 561 IPR000640 -
Seca8g04865 677 FunFam GTP-binding protein TypA 82 278 - -
Seca8g04865 677 FunFam GTP-binding protein TypA 279 379 - -
Seca8g04865 677 Gene3D Translation factors 279 379 - -
Seca8g04865 677 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 278 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 Gene3D - 469 562 - -
Seca8g04865 677 SMART EFG_C_a 475 564 IPR000640 -
Seca8g04865 677 CDD BipA_TypA_II 285 378 IPR047042 -
Seca8g04865 677 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 PRINTS GTP-binding elongation factor signature 203 212 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 PRINTS GTP-binding elongation factor signature 131 139 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 PRINTS GTP-binding elongation factor signature 151 161 IPR000795 GO:0003924|GO:0005525
Seca8g04865 677 NCBIfam small GTP-binding protein domain 86 228 IPR005225 GO:0005525
Seca8g04865 677 FunFam GTP-binding protein TypA 563 649 - -
Seca8g04865 677 Pfam Elongation factor Tu domain 2 299 368 IPR004161 GO:0005525
Seca8g04865 677 FunFam GTP-binding protein TypA 386 491 - -
Seca8g04865 677 FunFam GTP-binding protein TypA 469 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04865 Seca-Chr8 134961718 134971003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04865 85 212 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 4.52e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04865 K06207 - gmx:100785222 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04865 8 134961718 134971003 Seca8g04865 8 134961718 134971003 ECH