Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04861 ATGGGTGATCTTGCTCCTGATGTTACCGATTATCTTCTTCAGGAGATTTTTCGTGTTCATTACCCTTCCGTTCGGAGTGCTAAGGTTGTCACTGACCCTAACACTGGCCGCTCCAAGGGTTATGGTTTTGTTAAATTTTCTGATGAGAATGAAAGGAACCGTGCCATGACCGAAATGAATGGTGTTTATTGCTCCACTAGGCCTATGCACATAAGTGCTGCTATTTCAGGGTACATGGCTTATGCCCAGAAGATGTTTGAAGAAATGCCAAAGAAGAATGTTGTTATTTCACTGTTATTTCCATTTCTTTTAGTTGAGTTCTTTACTTGGTTTCAAGTTGATATTGGTTAA 351 0.4017 MGDLAPDVTDYLLQEIFRVHYPSVRSAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMHISAAISGYMAYAQKMFEEMPKKNVVISLLFPFLLVEFFTWFQVDIG. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04861 116 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 76 - -
Seca8g04861 116 SUPERFAMILY RNA-binding domain, RBD 2 77 IPR035979 GO:0003676
Seca8g04861 116 Gene3D - 1 73 IPR012677 -
Seca8g04861 116 SMART rrm1_1 1 72 IPR000504 GO:0003723
Seca8g04861 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 64 IPR000504 GO:0003723
Seca8g04861 116 FunFam Polyadenylate-binding protein RBP47B 1 86 - -
Seca8g04861 116 CDD RRM2_SECp43_like 2 75 - -
Seca8g04861 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04861 Seca-Chr8 134912350 134912700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04861 3 104 Eukaryotic Initiation Factors Gene Family AT2G23350 35.294 1.78e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04861 - - twl:119996506 143.665