Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04855 ATGGTCGTTCAAGGAACAGAACAAGGAACGGTGGTCTTTCGACGGTGTTTGGCGAACAATACAAAGGGAGTGAAGCAAAAGGTGGGGGCTATGGAGGAGAGGGAGTTAATGGAGGAGAGAGACGACCATGAACTGCAAACTAGAAAACGAAAGAGAAAGAAAGGGTCTGAGAATGAGAAGGGGGAAAAAAGGCGGCAACTATGGAGGAGAGGAGAGGATATTCCTGAGTGGGAATACAAGCAATTCAGCTATCCAGAGATGGAAATTCTGTGCTTGTTGCATCTTCTTCTAACTTGGTATCTGTCCAACACTTTGCTTGTTGGTGCTGGCTTCCAGGAACAAACTATACTACTTGCCATTAACCAAGAGCTTAGAGTCCCTGGATGGGATGCCAACAACTCAGATTACTGCTCTTGGCAAGGTGTCAGCTGTGGTGATCACTCACTGGTGGAGAAGCTTGATCTCTCTCATCAGAATCTTCAAGGTAATATTTCTTTGATGTCCAGACTCAAAGCTTTGCGGTGGCTTGACCTTTCAAATAACAACTTTCATGGATTGATTCCTCCTGTTTTTGGAAATTTATCTGACCTTGAATTTCTGGACTTGTCTTCAAACAAATTTGAAGGTTCAATTCCACCACAATTTGGTGCTCTCAGGAGCCTCAAATCATTGAACCTTTCAAATAACTTGCTTGTGGGAGAAATACCAAAGGAACTTCAAGGTCTAGAGAATTTGCAGGAGTTTCAAATTTCCTGCAATCACTTGAGTGGTTTTATACCTTCTTGGGTGGGCAATTTGACCAATCTGAGAGTTTTTACTGCTTATGAGAATCATTTGGGTGGCAGGATGCCAGATACTCTGGGATCAATTTCTGAGCTTCAAATACTTAATCTGCATTCAAACCACCTTGAAGGCCCAATACCAGCAAGCATTTTTTCTCCAGGGAAGTTACAAGTTCTGATTCTCACCCAGAACAATTTAAGTGGTGATCTTCCTGAGGAAATTGGGAATTGCCAAGCCCTTTCCAATGTTAGAATTGGCAGCAATCATCTTGTTGGTGCAATTCCTAGAAAGATTGGAAATCTTACTAGCCTTGCCTACTTTGAAGCTGACCATAATAATCTTTCTGGCAAGGTAGTATCAGAATTTTCTCTGTGTTCTAATCTCACTCTGTTGAATTTAGCTTCAAATGAATTCAGTGGAACAATTCCACCAGAGTTTGGAGAGCTTATGAACCTGCAGGAATTGATTCTTTCTGGAAATCACCTTGTTGGTGATATTCCAAATTCAATTCTGAGGTGCAAGAGTCTTAGTAGGCTTGACATAAGCAATAATAGGTTCAATGGAACACTGCCAAAGGAGATATGTAATATCTCTCGGTTGCAGTACTTGCTGTTGGGTCAGAATTCCATAGGAGGAGAGATCCCTCATCAAATTGGAAATTGTCCGGAACTTCTCGAATTGCAATTGGGCAATAACAATTTGACTGGAATCGTTCCTTCTGAGATTGGTTACATCAAGAATTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACCATTGCCCCCAGCATTAGGAAGACTAGACAGACTTGTTTCTCTGGATGTTTCAAACAATAATCTCTCAGGTAATATCCCAGATGAGCTTAAGGGAATGTTGAGCTTGATTGAGGTTAACTTCTCAAACAATCTGTTCAGTGGTCCAGTGCCATCATTTGTACCATTCCAGATGAGTCCTACTTCAAGTTTTTGGGGCAATGAAGGGCTTTGTGGGGAGCCATTGAACTCTTCATGCAGAGATCTTAATGATGATCAAAAGAATCACCATTACAGAGTTTCTTACCGAATCATAGTGGCCTTAATTGGATCAGGTTTGGCGGTTTTTATATTAGTAACTGCAATTGTTTTGCTATTTAATATCAGAAAGGGGGATGCAAAGGTAGCAAATCATGCTGGGAGTGTTTTTGATGATGATCTAAGACAAGCAATAAACCTTGATGCTGTTGTTGAAGCAACTCTGACAAGCTCCAATCAGCTTAGCAGTGGCACTTTCAGTGCAGTTTACAAGGCAATCATGCCCTCTGGGATGGTCTTATCTGTAAGGAGACTGAAGTCCATGGACAATACAATAACCCACCATCTGAACAAGATGATTGAAGAACTTGAAGTGCTGAGCAAACTTTGTCATGATAATCTAATGCAACTCATTGGATATGTTATTTATGATGATGTTGCTCTTCTCATTCATCATTATTTACCCAATGGAACATTAGCTCAGCTTCTTCATGAATCTCCAAGACAACCTGCATATCAACCTGACTGGCCAGTTAGACTATCCATTGCTATTGGAGTGGCAGAGGGTTTGGCTTTCCTTCATCAATTGGCAATCATCCACCTTGACATTTCTGCTAGCAATGTTCTCTTGGATGCAAATTCTAAGCCATTGATTGGGGAGATTGAGATATCAAAACTTCTGGATCCAACCAAAGACACAAGCAGTATTAGTACAGTTGTAGGCTCCTTTGGTTACATTCCACCAGAATATGCATATACAATGCAAGTCACAGAAGCTGGAAATGTTTATAGCTATGGTGTGATTCTGCTTGAGATTCTTACAACTAAACCACCAGTTGGTGAGGCTTTGGATGAAGGTGTAGTAGATTTGGTGAAGTGGGTTAAGGGTGCTCCAGTGAGAAGGGAAACTCCGGGGCAGATATTGGATGGAAGGCTTAGCACAGTTTCATTTGGTTGGAGGAAAGAAATGCTTGCAGTTCTAAATGTGGCGTTGCTGTGCACTGACCATAGGCCAGCCAAACGACCAAAAATGAACGAAGTAGTGGAAATGCTCCAAAAAATAAGAAATAACTAA 2877 0.4122 MVVQGTEQGTVVFRRCLANNTKGVKQKVGAMEERELMEERDDHELQTRKRKRKKGSENEKGEKRRQLWRRGEDIPEWEYKQFSYPEMEILCLLHLLLTWYLSNTLLVGAGFQEQTILLAINQELRVPGWDANNSDYCSWQGVSCGDHSLVEKLDLSHQNLQGNISLMSRLKALRWLDLSNNNFHGLIPPVFGNLSDLEFLDLSSNKFEGSIPPQFGALRSLKSLNLSNNLLVGEIPKELQGLENLQEFQISCNHLSGFIPSWVGNLTNLRVFTAYENHLGGRMPDTLGSISELQILNLHSNHLEGPIPASIFSPGKLQVLILTQNNLSGDLPEEIGNCQALSNVRIGSNHLVGAIPRKIGNLTSLAYFEADHNNLSGKVVSEFSLCSNLTLLNLASNEFSGTIPPEFGELMNLQELILSGNHLVGDIPNSILRCKSLSRLDISNNRFNGTLPKEICNISRLQYLLLGQNSIGGEIPHQIGNCPELLELQLGNNNLTGIVPSEIGYIKNLQIALNLSFNHLHGPLPPALGRLDRLVSLDVSNNNLSGNIPDELKGMLSLIEVNFSNNLFSGPVPSFVPFQMSPTSSFWGNEGLCGEPLNSSCRDLNDDQKNHHYRVSYRIIVALIGSGLAVFILVTAIVLLFNIRKGDAKVANHAGSVFDDDLRQAINLDAVVEATLTSSNQLSSGTFSAVYKAIMPSGMVLSVRRLKSMDNTITHHLNKMIEELEVLSKLCHDNLMQLIGYVIYDDVALLIHHYLPNGTLAQLLHESPRQPAYQPDWPVRLSIAIGVAEGLAFLHQLAIIHLDISASNVLLDANSKPLIGEIEISKLLDPTKDTSSISTVVGSFGYIPPEYAYTMQVTEAGNVYSYGVILLEILTTKPPVGEALDEGVVDLVKWVKGAPVRRETPGQILDGRLSTVSFGWRKEMLAVLNVALLCTDHRPAKRPKMNEVVEMLQKIRNN. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04855 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 605 - -
Seca8g04855 958 SUPERFAMILY Protein kinase-like (PK-like) 676 953 IPR011009 -
Seca8g04855 958 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 647 754 - -
Seca8g04855 958 ProSiteProfiles Protein kinase domain profile. 676 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04855 958 SMART LRR_typ_2 242 266 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 531 554 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 194 217 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 170 193 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 218 241 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 290 314 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 458 482 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 410 434 IPR003591 -
Seca8g04855 958 SMART LRR_typ_2 315 338 IPR003591 -
Seca8g04855 958 Pfam Leucine rich repeat N-terminal domain 128 144 IPR013210 -
Seca8g04855 958 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Seca8g04855 958 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Seca8g04855 958 SUPERFAMILY L domain-like 127 381 - -
Seca8g04855 958 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Seca8g04855 958 Gene3D Ribonuclease Inhibitor 260 357 IPR032675 -
Seca8g04855 958 Gene3D Ribonuclease Inhibitor 360 610 IPR032675 -
Seca8g04855 958 MobiDBLite consensus disorder prediction 28 65 - -
Seca8g04855 958 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 111 259 - -
Seca8g04855 958 Pfam Protein tyrosine and serine/threonine kinase 677 952 IPR001245 GO:0004672|GO:0006468
Seca8g04855 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 372 957 - -
Seca8g04855 958 SUPERFAMILY L domain-like 279 602 - -
Seca8g04855 958 CDD STKc_IRAK 682 955 - -
Seca8g04855 958 Gene3D Ribonuclease Inhibitor 111 259 IPR032675 -
Seca8g04855 958 Gene3D Transferase(Phosphotransferase) domain 1 755 958 - -
Seca8g04855 958 Gene3D Phosphorylase Kinase; domain 1 643 754 - -
Seca8g04855 958 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 755 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04855 Seca-Chr8 134799301 134804278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04855 87 956 Receptor kinase-like Gene Family AT2G41820 64.640 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g04855 PK_Tyr_Ser-Thr 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04855 - - adu:107492611 1333.93