Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04841 ATGGTTTCCTCTTCTTCAGACCCTGGCAAGTCCGAAGCTGGTGGCGGTGGCGCCGTGGAGACTGCGGAAGCTGCAGTGGCGAACGATGATGTGTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGACAGAGGGTGTACTGCGAAGGAGCGCATCAGCAAAATGCCTCCTTGTGCTGCCGGCAAACGCAGCTCCATATACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTACGAAGCACATCTCTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGGTCAGTTAGGGGCATATGATGATGAAGAGGCGGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCGGGTGCTCTTATAAACTTTCCAGTGACTGATTATGCAAGAGATCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTTTACGACGGAAGAGCAGTGGTTTTTCAAGAGGACTATCCAAATATCGGGGGCTCTCCAGTCGATGGGAGCCATCATATGGTCGAATGGCTGGACCTGACTACTTCAATAGCATATATTGTGGTGATGATTCAGCAGCAGAAACCGAGTCTGTAAGTGGTTTCTTCATAGAAAGAAAGTTTGATTTAACAAGTTACATCAAGTGGTGGGGATCTAATAAAAGTAGACAACCTGATGCTGGAGCAAGATCATCAGATGAAAAAAAGCGTGGATTTGCTGGAGATATTTGCTGTGAACTCAAAATATTGGAACAAAAAATTCAACCTTCAGAACCATACCGGTTGCCAGAGCTAGGCATGCCCCACAAAGGGAGAAAATATAAACTTTCTTCAGCCTCTGCTTTAAGTATCTTGTCACAATCAACTGATTACAAGAATTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAGCAATGATAATGATGAGAATGAAAATAAAAATACCATCAATAAGTTGGACCATGGAAAGATGGCTGAGAAATCATCACATCATGATGGTGGCAATGAAAGACTTGACATTGCAATGGGAATGAGTGGATCACTGCCTTTTCAAAGAAATGTGTACCCATTGACTTCATTGTTGTCTGCTCCGATTTTGAAAGCCTACAATACTGTTGATCCCATGGTAGATCCTGTTCTGTGGACACCTCTTGTTCCTATTCTTCATGCTGGCTTTTCTGGTGTAGCTGAGGTTACAAAGACTGAGACCAGTTCAACGTACACCAAATTTCAGGAAGAGGAGTGA 1266 0.4376 MVSSSSDPGKSEAGGGGAVETAEAAVANDDVLLYRGLKKAKKDRGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGQLGAYDDEEAAARAYDLAALKYWGPGALINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGPDYFNSIYCGDDSAAETESVSGFFIERKFDLTSYIKWWGSNKSRQPDAGARSSDEKKRGFAGDICCELKILEQKIQPSEPYRLPELGMPHKGRKYKLSSASALSILSQSTDYKNLQEKASKRQENSNDNDENENKNTINKLDHGKMAEKSSHHDGGNERLDIAMGMSGSLPFQRNVYPLTSLLSAPILKAYNTVDPMVDPVLWTPLVPILHAGFSGVAEVTKTETSSTYTKFQEEE. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04841 421 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g04841 421 MobiDBLite consensus disorder prediction 300 344 - -
Seca8g04841 421 Gene3D AP2/ERF domain 66 134 IPR036955 GO:0003700|GO:0006355
Seca8g04841 421 SUPERFAMILY DNA-binding domain 65 133 IPR016177 GO:0003677
Seca8g04841 421 ProSiteProfiles AP2/ERF domain profile. 66 132 IPR001471 GO:0003700|GO:0006355
Seca8g04841 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 310 - -
Seca8g04841 421 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Seca8g04841 421 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Seca8g04841 421 FunFam AP2-like ethylene-responsive transcription factor 65 134 - -
Seca8g04841 421 SMART rav1_2 66 138 IPR001471 GO:0003700|GO:0006355
Seca8g04841 421 Pfam AP2 domain 66 124 IPR001471 GO:0003700|GO:0006355
Seca8g04841 421 MobiDBLite consensus disorder prediction 299 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04841 Seca-Chr8 134412702 134417972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04841 24 405 AP2-EREBP Transcription Factor Family AT2G41710 62.660 4.02e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g04841 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04841 K09285 - gmx:100814117 640.958