Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04834 ATGGGGAGAGGAAAGATTGAGATCAAGAAGATTGAGAATTTGAACAGCAGGCAGGTTACCTTCTCCAAGAGACGTAATGGTTTGCTCAAGAAAGCCAGAGAGTTATCTGTTTTGTGTGATGCAGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATAAATTCTCCAACACAAGCATGGAGCATACTCTTTCAAGGTATAACAGAGGCATGGAATTGGATTGTGCAGATCAACCTATTGATGAGTCTCCAACAGATATTGTGCAGCCTGATACAAACCTTCTGAAGGATGAAATGTCAAAGCTTCGTTCAGCATACTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTCCAGCAGCTAGAAAATCAACTAACTGAAGGGATACTATCTGTCAAAGACAAGAAGGAACAAGTACTTGTAGAACAGCTTAGGAGGTCCAGGTTACAGGAACAAAAGGCTATGCTGGAGAATGAAGCTCTGCGAAAACAACTTGAGGAGATTGAAAACAAAACAAAGACACAGTTCCTTGAATTCAATTCGTTGGGTAGGACAATTTCCATGAACGGATCAAAACCCCTTTTCAATTGTGCTTCAGAGGATAATGAGTTTTCAGACACTTCCTTGCAATTAGGGATATCAACAAATTATGGTCGCAAAAGGAAAACATTAAAGATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGA 738 0.4092 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYKFSNTSMEHTLSRYNRGMELDCADQPIDESPTDIVQPDTNLLKDEMSKLRSAYLRMMGKELDGLSLKELQQLENQLTEGILSVKDKKEQVLVEQLRRSRLQEQKAMLENEALRKQLEEIENKTKTQFLEFNSLGRTISMNGSKPLFNCASEDNEFSDTSLQLGISTNYGRKRKTLKIEPCNDSGSQVASQ. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04834 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Seca8g04834 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g04834 245 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Seca8g04834 245 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Seca8g04834 245 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Seca8g04834 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 Coils Coil 124 184 - -
Seca8g04834 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g04834 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Seca8g04834 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04834 Seca-Chr8 134290873 134296800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04834 1 219 MADS-box Gene Family AT5G13790 49.333 8.01e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g04834 K-box 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04834 - - gmx:100792278 405.601