Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04823 ATGGAGAGTTTGCTGAAGGATTTCGAACTGAAAAACAAGGAGCGTTCCATCGAAGCTTTGAGAAGATGGAGATCTGCCGTCTCTTTGGTCAAGAACCGTCGCAGAAGGTTCCGCAATGTCGCAGATCTCGAAAAACGTACCCAAGCACAGGAGCAGCTCCAAAAATTACAGGGAAAGATACGGTCTGTTATCTATGTTCAACAAGCAGCACTGCATTTTAAGGATGCTATTGGTACAGCTGAATACAAGGTATCAGAAAAGACAAGAGAAGCTGGTTTTGGTATTGAGCCAGATGATATTGCATCAGTTGTTCGAAGCCATGACTACAAGAACTACAGAAAAATTGGTGAAGTTGAAGGGATTACAAGTAAACTCTCAGTCTCAGTCGAAGAAGGTATCAGTCAAGATAGTATACATAGCAGGCAAGAGATTTATGGACTCAACCGTTATCCTGAGAAGCCTTCTAAAAGCTTGCTGATGTTTGTTTGGGATGCATTACATGATATAACGCTAATCATTCTTATGGTTTGTGCTATAGTCTCTATAGCTATAGGGCTTCCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTCTAGGAATCATACTCAGTGTATTTTTGGTAGTCATGGTTACTGCTATCAGTGACTACCAGCAATCCCTGCAGTTCAGGGATTTGGACAAAGAAAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATTTGGTAGTGGGAGATATTGTTCATTTGGCAACTGGTGATCAAGTTCCAGCTGATGGGGTTTATATATCAGGGTATTCTTTGCTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCAGTAAATATAGATAAACAAAGGCCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGGTAGTTACAACTGTTGGCATGAGGACAGAATGGGGGAAGTTGATGGAAACTTTAAATGAGGGAGGAGAGGATGAGACTCCACTGCAGGTGAAATTACATGGAGTTGCCACAATTATTGGTAAAATTGGTTTGACTTTTGCTGTGCTAACATTTGTGGTGTTGACAATAAGGTTTCTGGTTGAAAAAGGAGTTAATGGTGATTTTGGTAGTTGGTCTTCAAATGATGCATTGAAGCTGCTTGATTACTTTGCTATTGCTGTAACCATTATAGTTGTTGCAATTCCTGAAGGATTACCATTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGACATCTTTCTGCATGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTGACCACTAACCATATGGTGGTTAATAAAATTTGGATATGTGAAAAGACCATGGAAATGAAAGGTAATGAGAGTGCAGACAAACTGAAAACAGAGATATCTGAAGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCTTCCGAAGTAGTTAAGGGCAAAGATGGAAATAAGACAATATTAGGAACACCAACTGAATCAGCATTGTTGGAATTTGGCTTGCTTTCAGGTGGTGATTTTGATGCCCAACGTAAAACCTGTAAGGTACTTATGGTTGAGCCTTTCAATTCATCCCGGAAGAAGATGTCTGTGCTTGTAGAACTTCCTGATGGAGGAGGGGTCAGAGCTTTCTGCAAAGGTGCATCAGAGATAGTATTAAAAATGTGTGACAAAATTATTGATTCTAATGGAACAGCTGTTGATCTTCCTGAAGAGCTAGCAAACAAAGTCTCTGATGTTATAAATGGCTTTGCCTCTGAAGCATTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGAAAACCAAGGAAAAAACAGTATCCCTGATAATGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGGGTTAGGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTATCCGCATGGTCACTGGTGATAACATAAACACAGCTAGGGCTATAGCTAAAGAATGTGGTATACTTACTGAGGATGGTGTAGCCATAGAAGGACCAGCATTTCGTGACTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTAGTAACCAATTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCCCCTGCACTGCATGAGTCAGACATTGGGCTTGCCATGGGGATAGCTGGAACCGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTTACTACTATTGTTAATGTGGCCAAATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGGTTATTAACTTTGTTTCTGCATGCATCACTGGTTTGTTGATTTATAAAAGTTTTGTTTTGTTTTCCAGATCTGCTCCGCTCACAGCTGTTCAATTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCTTTGGCCCTGGCAACTGAACCTCCTAATGATGGACTTATGGAAAGACCCCCAGTTGGAAGGACAACAAGTTTTATCACCAAACCAATGTGGAGGAATATTTTCGGTCAAAGTTTATATCAACTAATTGTCCTCGCTATTCTCAATTTTGATGGGAAGAGGCTACTAGGACTTACTGGCTCAGATGCAACTATAATGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGTCAGGTGTTTAATGAGATAAACAGCCGAGAAATTGAAAGGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTTACTGTGATTTTCTCCACAGTGGTATTTCAAGTAATCATAGTTGAGTTCTTGGGAACATTTGCCAGCACGGTGCCTCTAAACTGGCAATTCTGGTTACTCAGCGTGGTAATTGGAGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAAAGATACTACAAAGCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCTGAGCTGGCATAA 3138 0.4063 MESLLKDFELKNKERSIEALRRWRSAVSLVKNRRRRFRNVADLEKRTQAQEQLQKLQGKIRSVIYVQQAALHFKDAIGTAEYKVSEKTREAGFGIEPDDIASVVRSHDYKNYRKIGEVEGITSKLSVSVEEGISQDSIHSRQEIYGLNRYPEKPSKSLLMFVWDALHDITLIILMVCAIVSIAIGLPTEGWPKGVYDGLGIILSVFLVVMVTAISDYQQSLQFRDLDKEKKKIFVQVTRDGKRQKISIYDLVVGDIVHLATGDQVPADGVYISGYSLLIDESSLSGESEPVNIDKQRPFLLSGTKVQDGQGKMVVTTVGMRTEWGKLMETLNEGGEDETPLQVKLHGVATIIGKIGLTFAVLTFVVLTIRFLVEKGVNGDFGSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTMEMKGNESADKLKTEISEEVLSILLQAIFQNTSSEVVKGKDGNKTILGTPTESALLEFGLLSGGDFDAQRKTCKVLMVEPFNSSRKKMSVLVELPDGGGVRAFCKGASEIVLKMCDKIIDSNGTAVDLPEELANKVSDVINGFASEALRTLCLAVKDINENQGKNSIPDNGYTLIAIVGIKDPVRPGVREAVQTCLAAGITIRMVTGDNINTARAIAKECGILTEDGVAIEGPAFRDLSPEQMKDIIPRIQVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNVVALVINFVSACITGLLIYKSFVLFSRSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERPPVGRTTSFITKPMWRNIFGQSLYQLIVLAILNFDGKRLLGLTGSDATIMLNTLIFNSFVFCQVFNEINSREIERINIFRGMFDSWIFFTVIFSTVVFQVIIVEFLGTFASTVPLNWQFWLLSVVIGAVSMPIAAILKCIPVEKDTTKHHDGYEALPSGPELA. 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04823 1045 Gene3D - 15 76 - -
Seca8g04823 1045 PRINTS H+-transporting ATPase (proton pump) signature 783 808 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 PRINTS H+-transporting ATPase (proton pump) signature 751 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 SMART Cation_ATPase_N_a_2 112 186 IPR004014 -
Seca8g04823 1045 Pfam Cation transporting ATPase, C-terminus 848 1021 IPR006068 -
Seca8g04823 1045 FunFam Calcium-transporting ATPase 15 75 - -
Seca8g04823 1045 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Seca8g04823 1045 Pfam E1-E2 ATPase 234 427 - -
Seca8g04823 1045 FunFam Calcium-transporting ATPase 210 332 - -
Seca8g04823 1045 PANTHER CATION TRANSPORTING ATPASE 85 1024 - -
Seca8g04823 1045 SFLD p-type atpase 431 804 IPR044492 -
Seca8g04823 1045 FunFam Calcium-transporting ATPase 648 796 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 775 787 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Seca8g04823 1045 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Seca8g04823 1045 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 660 IPR023299 GO:0000166
Seca8g04823 1045 Pfam Cation transport ATPase (P-type) 506 590 - -
Seca8g04823 1045 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 47 IPR024750 GO:0005516
Seca8g04823 1045 SFLD Haloacid Dehalogenase 431 804 - -
Seca8g04823 1045 CDD P-type_ATPase_Ca_PMCA-like 141 896 - -
Seca8g04823 1045 Gene3D - 164 1022 - -
Seca8g04823 1045 FunFam Calcium-transporting ATPase 768 1026 - -
Seca8g04823 1045 Gene3D - 446 796 IPR023214 -
Seca8g04823 1045 SUPERFAMILY HAD-like 448 868 IPR036412 -
Seca8g04823 1045 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1024 IPR023298 -
Seca8g04823 1045 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Seca8g04823 1045 Gene3D - 459 655 IPR023299 GO:0000166
Seca8g04823 1045 FunFam Calcium-transporting ATPase 459 655 - -
Seca8g04823 1045 NCBIfam HAD-IC family P-type ATPase 389 514 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 NCBIfam HAD-IC family P-type ATPase 201 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 NCBIfam HAD-IC family P-type ATPase 716 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g04823 1045 NCBIfam calcium-translocating P-type ATPase, PMCA-type 107 1025 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca8g04823 1045 Pfam Cation transporter/ATPase, N-terminus 116 181 IPR004014 -
Seca8g04823 1045 FunFam Calcium-transporting ATPase 164 221 - -
Seca8g04823 1045 Gene3D - 132 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04823 Seca-Chr8 134071322 134080913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04823 59 1042 Primary Pumps ATPases AT3G57330 72.561 0.0 1474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04823 K01537 - gmx:100791934 1694.48