Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04819 ATGGATCACACGGGAAAACCCAACCACTCGCTCTCCTACTCCACTCTCTTCAATCTTGAGTCTCTGATGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAAGAGAGCAGAGGTAGCCAAGGTGGTGGGGCAATTGCAAATCACAGTAATGGGAATGTGCACGCAAAGGAGGTGAATTTGTTAAAGAAGAGGGCGTGGTCGCAAAACAGTGATGATGAGGATGAGAGCAGTTTTTACAGGACATACATGACAGAGGAGCGGTATCGATCAATGCTCGGAGACCATGTTCAGAAATATAAGAGGTCTAAGGATGCCTCCTCTAGTCCTGCTCAAAATCGGGTTGCTGTCCCACTTGTCAAAAGTAACACTGGCTCAAAAGCACGGAAGTTAGGGAATGATCTCAGGGGAGGACTGCAAGCTGCAGAGACTACATCTGAATGGGTATATGATTCCAATTCTCAGAAACCAGGAAACTACCGTGATGCAGATTTCATGCAGCAATATGGCACTAATAGGGTTATGTATGAACCTGCTACTTTAGAAATTGGGGATGGTATCGCTTACAAGATTCCTCCAATTTATGATAAATTGGCTTCAATGCTGAACCTTCCAAGCTTCTCTGATATCCATGTGGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTGCTGATAAAAGGTTTGGGAATAGAAACCGAGCTGGAATGGGGGAACCCCTATCTCAATATGAATCACTTCAGGCACGAATGAAGGCCATGTCAGCTTCTAATTCACCTCTTAAATTCAGTCTGAAAGTGACTGATGCTGGTTTAAATTCATCCATTCCGGAGGGAGCTGCTGGAAGCATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAAGTTTTGGAAAAAGGTGACACCTACGAGATCATTGAACGAAGCCTACCTAAGAAACAAAAGTTAAAAAAAGATCCAGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAAGAATTTTACTAATTTTCATAGAAAGCAACTCGTTGATGCCAAGAGATGCTCAGAGTACTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAAATGGATTAGGAGTGCTAGCATTCGCACCCGGAAACTATCTAGAGACATGCTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAATAAGTCAAACATACTATCTTCGGAACCCATGGTAGAGGAGGAAACAAATGATCAAGATGCACTGTTCGACTCTTCAGATGTTGGGTCTAAGGAGGAGGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGCCTCGAAGCAGAGAAGGTTGACTAGTGCTTTTGACAGTGAATGCCTGAGGCTGCGCCAGGTGGGTGAAACTGATTCACTCGCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAACGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGCCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATAAAAAGTTCAAACAGTATACGATGGAAGACACTCCTCAGCTTTAATTGTCGAAATCGCCTTCTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGACGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGGAAAACTGAGATTATGGTGCATTGCAAGTTGAGTTCTCAGCAGCAGGCTTTCTATCAAGCAATTAAAAACAAGATATCTCTTGCTGAACTGTTTGATGGTAATCGTGGGCAGCTCAATGAGAAGAAAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACTTTTACTTTGGAGAGATTCCAAATTCCCTTCCGCCTCCTCCATTTGGGGAATTGGAGGATGTATACTATCCTGGAAGTCACAACCCCATATCATATGAGGCACTTCGGGGATATGAAATGGGATTATTGGTACTAGGCAGACATTGA 2844 0.4209 MDHTGKPNHSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDEESRGSQGGGAIANHSNGNVHAKEVNLLKKRAWSQNSDDEDESSFYRTYMTEERYRSMLGDHVQKYKRSKDASSSPAQNRVAVPLVKSNTGSKARKLGNDLRGGLQAAETTSEWVYDSNSQKPGNYRDADFMQQYGTNRVMYEPATLEIGDGIAYKIPPIYDKLASMLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRFGNRNRAGMGEPLSQYESLQARMKAMSASNSPLKFSLKVTDAGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKLKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHKNFTNFHRKQLVDAKRCSEYCQREVRMKVSRSLKWIRSASIRTRKLSRDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNILSSEPMVEEETNDQDALFDSSDVGSKEEEDPEEAELKKEALKAAQEAASKQRRLTSAFDSECLRLRQVGETDSLAQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEIMVHCKLSSQQQAFYQAIKNKISLAELFDGNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPNSLPPPPFGELEDVYYPGSHNPISYEALRGYEMGLLVLGRH. 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04819 947 MobiDBLite consensus disorder prediction 486 516 - -
Seca8g04819 947 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 601 772 IPR014001 -
Seca8g04819 947 MobiDBLite consensus disorder prediction 30 57 - -
Seca8g04819 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 895 IPR027417 -
Seca8g04819 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 817 IPR027417 -
Seca8g04819 947 MobiDBLite consensus disorder prediction 30 61 - -
Seca8g04819 947 SMART ultradead3 585 780 IPR014001 -
Seca8g04819 947 FunFam Putative DNA helicase INO80 561 839 - -
Seca8g04819 947 Coils Coil 514 534 - -
Seca8g04819 947 MobiDBLite consensus disorder prediction 501 516 - -
Seca8g04819 947 Pfam SNF2-related domain 604 891 IPR000330 GO:0005524|GO:0140658
Seca8g04819 947 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Seca8g04819 947 Pfam DNA-binding domain 352 480 IPR020838 GO:0003677
Seca8g04819 947 PANTHER HELICASE SRCAP-RELATED 490 909 - -
Seca8g04819 947 Coils Coil 428 467 - -
Seca8g04819 947 Gene3D - 827 896 IPR027417 -
Seca8g04819 947 Gene3D - 584 826 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04819 Seca-Chr8 134024828 134038481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04819 610 899 RAD5 or RAD16-like Gene Family AT5G43530 29.167 2.06e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g04819 SNF2_N 3.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04819 K11665 - gmx:100780615 1545.02