Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04811 ATGGCTTCTTCCTCATCAAATTCAAAGCATGATGTTTTTCTCAACTTTAGAGGAGAAGATACTCGTTGCACTTTTACAAGTCATCTCTACTCTGCCTTGTGTCGAAATAAAATCCACACATTCATTGACGATGAGGAAATTAAGAGAGGAGATAAACTGTCACCAACACTTCTTTCAGCTATTGAAACCTCCAAGATTTCAGTAACAATTTTCTCACAGAATTATGCTTATTCTGCGTGGTGTTTGGATGAGCTCCAGAAGATCATCGAGTGCAAAGAGAACAAACAACTTGTTGTGATTCCTGTCTTCTATCACATCGATCCATCACATGTAAGACACCAAAGGGGAACTTACCAAGATGCACTTACCAAACACGAGGAGCGTTTCAGGGACAATCTAATCAAGGTACATAAGTGGAGAACTGCTCTACGTGAAGCAGCCAACTCAGCAGGATGGGATTCCTCCAATATAAGGCTGGAGTCCGAACTAGTTGAAAAAATTGTTGAAGATATATTACAGAAATTGAATCGTATGAGCCCACATGTTCCAAAGGGGCTTGTTGGAATTACTAGACACATTGCACATGTGGAATCATTGTTATGCACAGGGTCAACTGATGTACGTATTGTTGGAATCTGGGGCATGGGTGGGATAGGTAAAACAACCATTGCAGATGCTGTGTGTGCAAAACTCTCTTCTCAATATGAGAGATATTACTTTGTTGCCAATGTGAGGGAGGAATGGAAAAATCGTAGAGAAAATGATTTACGGAACAAACTTCTTATTGGAATATTAGGGGACCAAAATTTGTATATCAGTTCCCCTGCTATGAGTTCTGCTTTTGTTGTAGAAAGGCTTCAACGTAAAAAGCTCCTCGTCGTTCTAGATGACGTGAGTGATTCAAAACAAATAGAATATCTTGTGGGAGAGAAATATTGGCTTGGACCTGGTAGTAGAGTCATAGTGACAACCAGAAATAAAGATGTGTTTACTAGAGGAGTTGATGGTGTTTACCAAGTGATGGAGCTGAATTTTCATGAAGCACTAGAGCTTTTTAGCTTGAATGCGTTTCAACAAGACCATCCAATGAGGGAATACAGACACTTGTCAGAAAGGGCAGTAAATTATGCCAAGGGCATTCCTTTAGCTCTTAAAGTTCTTGGTTCTTATCTTTATTCCAAACTACCAAAAGATTGGGAAAGTGCATTGGAAAAACTGAAGAAAATTCCCAGAGTTGAAATTTATGATGTGTTAAGATTGAGTTATGAAGGATTAGACCCTGAAGAGCAGAATATATTTTTAGATATTGCATGCTGTTTGAAAGGAGAGACAAAAAGCCGTATAACAAGTATTTTAGATGGCTGCGGCTTTTCTACAGATATTGGGATCACAAGCCTTCAAGATAGGTCTCTTATAACTGTTTCTAAAGACCACACGGTCCAGATCCATGATTTGATACAAGAAATGGGTTGGCATATCGTTCGTGAAGAATCAATGAAAAAGCCTGGAAAACGAAGTCGGTTGTGGGATCCTAATGAAATTTATGATGTCCTCAAGCATAACAAGGGTACTGACAGTATTGAAAGCATAGTGTTGGACATGTCTCAAATCAAAGATGTGACAATAAGCCCTCAAACTTTCTTCAGAATGCACAAGCTAAGGCTTTTGAAATTTTATATGACCTCATGCGATAAGAGAAGCAATGTACATATTTCCAGAGATCTTGAATGTATGCCTGATGAATTAAGTTATCTCCGATGGGACTGTTTTCCATTGAAATCCTTACCACCATCGTTTTCTGTAGAGAAGCTGGTTGAACTTGATCTAAAACATAGCCTCATTGAAAAACTATGGGATGGAATGCAGGATCTTTTGAATTTGAAGTCATTGTACCTTGGTGGTTGCAAGCGCCTGACTGAGCTCCCAGATTTCTCTATGGCCTCAAAACTTGAAGAAGTACATCTTGATGATTGTACAAGTTTATTGAATGTTCCTTCATCCATTTTGTCACTTGATAGTCTTTTTGCACTGAATCTGACAGGCTGTAAACAGCTTCGTAACATTCAAAGTGAGAAGCAATCTAGATCTCTTCGATGGTTTAATCTAAGGGGGTGCTCAAGACTTGTAAAGTATTCATTTTCTTCAGAGAAATTGGAGTACCTGATCTTAGATGGCACTGCAATTGAAGAACTACCCTCATCAGTTGGACAACTCAAGGACTTTTCTAGCATGTATCCCCAGAATCTTCCAAATATCCTCTATGAGAATGGTTCAGATTGTTCCATTCAGCTTCTTGACTACCCAAAACATGAGAAATTACCTCCAATATTTGACACCTCACTGTCTATTACAACTCTCTGTCTGGATAATTGTTTAAATTTATCAAAACTCCCTGACAACCTTGGCCTCTTATCAAAATTAAACAAACTTTCATTAAAAGGAAGCAATATTGAGAACTTTTCTGGTAGCATAAAAGATCTTTCTCAGTTGAGAGTTCTCAATGTAAGCAATTGCAGGAGGCTTCGTTCCTTGCCAGAGCTCCCATTCTTGTTACAGGACTTGAATGCAAGTAATTGCATTTCCCTAGAAACAGTATCAAATTTAGGGATCACAATGTTGCAAGATTCTTTTGGTAGACTGAAGAAGAGCTCATTGCTCAGACAGATTCAAGAGGAAGAAAAAATGTATATTCGTAATCGTGACTATTTGGGAAGATTTGAATTTCATAATTGCATAAAGTTGGACCAGATTTCATGCAAGACTGTTATGGAAGAAACACTAATTAGAATTCAGCTAGCTGCCTACCTATCAACATTGATTGAAGAATGTTATGATCCTTATTGTCAAGCTGATGAAGTTTTTAGAAACTTTGACCCTGAAGATTTTACATATATTTCCCGTCCAGTTTATATTATTTTGCCGGGAAATGAAGTACCAAATTGGTTCATGTATAAAGGAACAGACTCCCCAATCATAAATCTAGAACTTTCTCCACGGTGGCATCGTTATTTCAATTACCTGGGCTTTGCTTTCTGCCTTGTTCTAGGACCACCATCCCACTCAAATAGGAAGAAAAATCATCACATTGGTTTTGTGGCAGGGTGTAGATACTATTTTGAAGGCAAATATGCTGGAACTTGCATTATAAAGTCGTCTTGCAATGATGCTGAATCAGATCAGGTATGGCTTTGGTATGATAAATTGTTAAAAGCTGAAGAGGGAACAAGCAATATTGCTTCATATAAGATGCAGGTCTCATTTGAATTTTTTGTAAGGCCTCGCAGTTCAGGACTTGTTGTGAAACAATGTGGAATTCGACCATTATATGCTCCATATGACATCATGCAAAACTCAAATGAAGAAGGAAACAGAGAAAGTAAGATACCTTATGTTGAGTCTGAAGTCAACTCAATGCTAAGGAATTATGTGCTGTTTCGCGAGTATGGTCATCCTCCCGACGGCCTTGGATTGCCATCACAACAAGAAACAATTTCCGGGTATCCTGATCGACATGTTGGGGAATCCTTTCTGTTAATTCATTGTGCCAAGAGTGTTGATGTACTTAGAATGGAACACAAGTGCTTGAGTATTGGAGCTGAAGTATTTGTGTATTTTGGCCGTGTTGGTAGTCACCACCTACGTGGTGTGTCCACACAACGTGCTCTGCGGTATTTAGCACAACTGCTTATGGATGACTATTGTAATTTTGGTAAACTCCTAGACAACATCAACTTCTTTTCATCGCTAAGGAGATTGTCTCTAAATGGTTGCAATGTTGAGACCCTGCCTGCTAGCATCAAGCATCTTTCAATGCTGGAACATCTTTTATTAAATGAATGCAAGAGGCTTAGGTCTCTCCCGAAGCTTCCGCGGTCCCTTCAATATTTATTTGTCCAGAAGTGCACATCTCTGGAGACAGTTGAATTGGCTAAGAGCAAGAAGATGGAAGTTCATGGAAAATTTCCCAATGAAATGGCAGGTATGGTATTCGAAAAAGTATCGAGAATACAAGTTACTGACCCGGGAAGAAGGGTTACAGACTGGTCCATGCAAAGGTTAACACGGGATTTGATGGCCATTGAATTCTATGTTGCTTCATGTACCGAGCCATTGAGTGTCAGGTGTGAAAGCGGTACATTGAAAGTTAACATCACGTGA 4158 0.3901 MASSSSNSKHDVFLNFRGEDTRCTFTSHLYSALCRNKIHTFIDDEEIKRGDKLSPTLLSAIETSKISVTIFSQNYAYSAWCLDELQKIIECKENKQLVVIPVFYHIDPSHVRHQRGTYQDALTKHEERFRDNLIKVHKWRTALREAANSAGWDSSNIRLESELVEKIVEDILQKLNRMSPHVPKGLVGITRHIAHVESLLCTGSTDVRIVGIWGMGGIGKTTIADAVCAKLSSQYERYYFVANVREEWKNRRENDLRNKLLIGILGDQNLYISSPAMSSAFVVERLQRKKLLVVLDDVSDSKQIEYLVGEKYWLGPGSRVIVTTRNKDVFTRGVDGVYQVMELNFHEALELFSLNAFQQDHPMREYRHLSERAVNYAKGIPLALKVLGSYLYSKLPKDWESALEKLKKIPRVEIYDVLRLSYEGLDPEEQNIFLDIACCLKGETKSRITSILDGCGFSTDIGITSLQDRSLITVSKDHTVQIHDLIQEMGWHIVREESMKKPGKRSRLWDPNEIYDVLKHNKGTDSIESIVLDMSQIKDVTISPQTFFRMHKLRLLKFYMTSCDKRSNVHISRDLECMPDELSYLRWDCFPLKSLPPSFSVEKLVELDLKHSLIEKLWDGMQDLLNLKSLYLGGCKRLTELPDFSMASKLEEVHLDDCTSLLNVPSSILSLDSLFALNLTGCKQLRNIQSEKQSRSLRWFNLRGCSRLVKYSFSSEKLEYLILDGTAIEELPSSVGQLKDFSSMYPQNLPNILYENGSDCSIQLLDYPKHEKLPPIFDTSLSITTLCLDNCLNLSKLPDNLGLLSKLNKLSLKGSNIENFSGSIKDLSQLRVLNVSNCRRLRSLPELPFLLQDLNASNCISLETVSNLGITMLQDSFGRLKKSSLLRQIQEEEKMYIRNRDYLGRFEFHNCIKLDQISCKTVMEETLIRIQLAAYLSTLIEECYDPYCQADEVFRNFDPEDFTYISRPVYIILPGNEVPNWFMYKGTDSPIINLELSPRWHRYFNYLGFAFCLVLGPPSHSNRKKNHHIGFVAGCRYYFEGKYAGTCIIKSSCNDAESDQVWLWYDKLLKAEEGTSNIASYKMQVSFEFFVRPRSSGLVVKQCGIRPLYAPYDIMQNSNEEGNRESKIPYVESEVNSMLRNYVLFREYGHPPDGLGLPSQQETISGYPDRHVGESFLLIHCAKSVDVLRMEHKCLSIGAEVFVYFGRVGSHHLRGVSTQRALRYLAQLLMDDYCNFGKLLDNINFFSSLRRLSLNGCNVETLPASIKHLSMLEHLLLNECKRLRSLPKLPRSLQYLFVQKCTSLETVELAKSKKMEVHGKFPNEMAGMVFEKVSRIQVTDPGRRVTDWSMQRLTRDLMAIEFYVASCTEPLSVRCESGTLKVNIT. 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04811 1385 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 177 - -
Seca8g04811 1385 Pfam TIR domain 9 181 IPR000157 GO:0007165
Seca8g04811 1385 SUPERFAMILY L domain-like 1213 1308 - -
Seca8g04811 1385 Pfam NB-ARC domain 193 412 IPR002182 GO:0043531
Seca8g04811 1385 Gene3D - 342 426 IPR042197 -
Seca8g04811 1385 SMART till_3 9 149 IPR000157 GO:0007165
Seca8g04811 1385 PRINTS Disease resistance protein signature 825 841 - -
Seca8g04811 1385 PRINTS Disease resistance protein signature 285 299 - -
Seca8g04811 1385 PRINTS Disease resistance protein signature 377 391 - -
Seca8g04811 1385 PRINTS Disease resistance protein signature 209 224 - -
Seca8g04811 1385 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 709 IPR044974 GO:0006952
Seca8g04811 1385 Gene3D Ribonuclease Inhibitor 1199 1335 IPR032675 -
Seca8g04811 1385 Gene3D Ribonuclease Inhibitor 518 692 IPR032675 -
Seca8g04811 1385 Gene3D - 176 335 IPR027417 -
Seca8g04811 1385 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Seca8g04811 1385 Pfam C-JID domain 973 1110 IPR045344 -
Seca8g04811 1385 Gene3D Ribonuclease Inhibitor 693 901 IPR032675 -
Seca8g04811 1385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 436 IPR027417 -
Seca8g04811 1385 SUPERFAMILY L domain-like 482 867 - -
Seca8g04811 1385 ProSiteProfiles TIR domain profile. 8 175 IPR000157 GO:0007165
Seca8g04811 1385 Gene3D - 2 175 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04811 Seca-Chr8 133981693 133988338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04811 5 840 WRKY Transcription Factor Family AT4G12020 32.746 3.14e-115 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04811 - - tpra:123891409 1823.14