LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g04808	ATGGCAAAGAGGAAGAGTTGGTTTGGATGGGTGAAAAGACTATTCATTTCTGAGTCAAAGGACAAAAAGTCAAAGAAATGGGGATGGAGTTTTGGAAGGATTAAACAGAAGCAATACCCCACAATAACAGCTCCAAACAGGACATTGATAGAAGCAAGTGCAGAGCAGAGAAAGCATGCTTTGACTGTAGCTATTGCAACAGCAGCTGCTGCAGAGGCTGCAGTTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGGTGCTTCTCGTTCTTATTCATATCTTTCCAAGGGAGACAGAAGTTTGGCTGCTATCAAGATTCAAAGTGCATACCGTGCACATCTTGCTAGGAAAGCATTAAGGGCATTGAAGGGAGTTATAAGACTACAAGCCATAATTCGTGGTCAAGCTGTGAGACGTCAATTTTCCAGCACTTTGAGGAATTTTCCCTCCAATGCAAGAAATCAGGTGGAAATTCAGGAAAGAAGCAGCTATACTGAGGAAGAAAATTACAAAAATGACCTTATCAGACAATTTCCAAAGCAAAAGAAAAAGTTAGAAGAGAAAGAACTAAAGAATTTTTTGCAGCCTGAATGCCATAGTCAAAGAACTTGGGATTGTAGCTCACACTCAAGAGAGGACATTGAAGCCATCTGGTCAAGAAAGCAAGAGGCAATTGTCAAAAGAGAGCGCATGAGGCAATACTCTTCTTCACAAAGGGAGAGAAAATTTCCTCAAATGGAGGAAGAATCTGTTCACAAGAAGGAATATGGAAGAGATAGCTGCCGCACGCTAGGAGAGTGGCTACATAAAGAAACATGTGATTGGAATGTGCTTTATAAACCTTCAAAGATGACAATAAAAACAGAATTGCAAGAAGGACTGAGTCCACAAATTTCCTTCCCAAGGAAATCATTTTCTCATATAAAAAGAAGTTCAGTTGGAGATGAGAGTTCCATGCCAAATTCTCCTGTTTTTCCTAAATACATGGCTGTGACTGAATCCAGCAAAGCAAAGGTGAGGTCTATGAGCACTCCAAGACAAAGAACAGGATATCTGGATGTTAGTTCCAATCAGAATGAGCCTCACAAGGAAGACATTTCCTTTTGCTCTTCTTATTATGGTGCAACTACCAGCAGTAGCACCAATGAAAACAGTTCAAGCTACCAGCAGAGATGCCAAAACACAAATATCCATTATTATCCTTAG	1215	0.4091	MAKRKSWFGWVKRLFISESKDKKSKKWGWSFGRIKQKQYPTITAPNRTLIEASAEQRKHALTVAIATAAAAEAAVAAAHAAAEVVKLTGASRSYSYLSKGDRSLAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGQAVRRQFSSTLRNFPSNARNQVEIQERSSYTEEENYKNDLIRQFPKQKKKLEEKELKNFLQPECHSQRTWDCSSHSREDIEAIWSRKQEAIVKRERMRQYSSSQRERKFPQMEEESVHKKEYGRDSCRTLGEWLHKETCDWNVLYKPSKMTIKTELQEGLSPQISFPRKSFSHIKRSSVGDESSMPNSPVFPKYMAVTESSKAKVRSMSTPRQRTGYLDVSSNQNEPHKEDISFCSSYYGATTSSSTNENSSSYQQRCQNTNIHYYP.	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g04808	404	MobiDBLite	consensus disorder prediction	379	404	-	-
	Seca8g04808	404	Gene3D	-	101	150	-	-
	Seca8g04808	404	ProSiteProfiles	IQ motif profile.	126	153	IPR000048	GO:0005515
	Seca8g04808	404	MobiDBLite	consensus disorder prediction	338	366	-	-
	Seca8g04808	404	SMART	iq_5	124	145	IPR000048	GO:0005515
	Seca8g04808	404	SMART	iq_5	101	123	IPR000048	GO:0005515
	Seca8g04808	404	PANTHER	IQ-DOMAIN 5-RELATED	4	373	-	-
	Seca8g04808	404	Pfam	IQ calmodulin-binding motif	105	123	IPR000048	GO:0005515
	Seca8g04808	404	Pfam	IQ calmodulin-binding motif	126	144	IPR000048	GO:0005515
	Seca8g04808	404	Pfam	Protein of unknown function (DUF4005)	317	390	IPR025064	-
	Seca8g04808	404	MobiDBLite	consensus disorder prediction	339	366	-	-
	Seca8g04808	404	ProSiteProfiles	IQ motif profile.	102	130	IPR000048	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g04808	Seca-Chr8	133945930	133949768	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g04808	1	395	IQD Protein Family	AT5G03960	43.810	2.01e-79	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g04808	-		-	gmx:100800767	520.776