Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04774 ATGGCCACTTCATCAAAATCCAAGGTAGAAGAAGTAGAAATTATCATTAATGGTGAAGAAAAGAATGTTAAGCCAAAACAAGAGGATGGTGTTAGTTTTGCTATACAATTGGCAAGTTCACTTGTGTTGCCAATGGCTTTGCACTCTGCATATGAGTTGGGCATTTTCAACATTATTGCCAAATTTGGGGAAGGTGCCAAGCTCTCAGCAAAGGACATTGCAGTTCATATTGGTACCAATAACCCAGAAGCACCCATGATTCTAGATCGTCTTCTTAGGTTTTTGGCTAGTGATCGTGGCCGAGATCGAGGATGGTGGTCCGACAGGAATGACACGGTGGTCCGAGGGGTCCTAATGGTTGTTGGGGTTTCTCCGGTGGTCGCTCCGGTGTGGGGCGCGCGGCAGGGGTACCTGCAAAGGCACTCCGATGCTCAAGTCAGAGAAGGGGGTTGA 453 0.4768 MATSSKSKVEEVEIIINGEEKNVKPKQEDGVSFAIQLASSLVLPMALHSAYELGIFNIIAKFGEGAKLSAKDIAVHIGTNNPEAPMILDRLLRFLASDRGRDRGWWSDRNDTVVRGVLMVVGVSPVVAPVWGARQGYLQRHSDAQVREGG. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04774 150 Gene3D - 16 100 IPR036388 -
Seca8g04774 150 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Seca8g04774 150 FunFam Caffeic acid 3-O-methyltransferase 15 99 - -
Seca8g04774 150 SUPERFAMILY "Winged helix" DNA-binding domain 27 98 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04774 Seca-Chr8 133081712 133082164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04774 20 97 Monolignol Biosynthesis Gene Families AT5G54160 48.148 2.53e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04774 - K13066 aprc:113848912 101.679