Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04768 ATGTCCCTGGAAGACTCTCTAAGATCTCTCTCCCTTGACTACCTAAACCTTCTCATTAATGGCCAAGCCTTCAGTGACGTCACCTTCCAAGTCGAGGGTCGTTTGGTCCACGCTCATCGCTGCATCTTAGCAGCCAGGAGCCTCTTCTTCCGGAAATTCTTCTGTGGGCCTGACCCGCCTTCTGGGCTCGACCCGACAGGAGGGAACTCTCGGGCCGGGCCAGGGACAGCCAGGCCCGGCGTGATACCGGTGAACTCGGTTGGGTACGAGGTGTTCTTGCTCCTCCTGCAGTTTCTCTACAGTGGACAAGTCTCTATTGTCCCTCAGAAGCATGAGCCAAGGCCTAATTGTGGTGAGAGAGGATGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTGGCATTGCTCACTCAAAAGCAATTGGCGAGCATGGTAGAGAAAGCGTCAATAGACGATGTGATGAAAGTACTAATAGCATCAAGAAAGCAAGAAATGCACCAACTATGGACCACATGTTCCCACCTTGTTGCCAAGTCAGGTTTACCCCCTGAAGTCTTAGCCAAACACCTCCCAATCGACGTAGTAGCAAAGATCGAAGAGCTCCGTCTCAAATCTTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCATCACCATCACCACCACCACGACCTCGGCATCGCAGCCGCCGCCGACCTGGAGGACCAAAAAATCCGGCGAATGAGGCGCGCTCTTGACTCCTCCGATGTGGAACTCGTCAAACTGATGGTAATGGGAGAAGGCCTTAACCTCGACGAAGCATTGGCTTTACACTACGCCGTTGAGAATTGCAGCAGAGAAGTCGTGAAAGCCTTGTTGGAACTCGGTGCAGCTGATGTTAATTTCCCGGCAGGACCTGCCGGAAAGACGCCGCTTCATCTCGCCGCCGAGATGGTCTCGCCGGAGATGGTGGCGGTTTTGCTTGACCACCATGCGGATCCGAATGTGAGAACGGTTGATGGTGTGACTCCTTTGGATATTCTCAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCGGTCCCTGGATTAACTCACATTGAACCAAATAAGCTAAGGCTGTGTTTGGAGCTTGTTCAATCAGCTGCACTTGTTCTCTCACGTGAAGAAAGCAATGCTAATGCCAATGCTAATAATAACAATAATAACAACAATAACAATGCTTCTTCAGCAGCAGCTATATACCCTCCTATGAGTGAAGATCATAGCAGCAGTAGCAGTGGGAACAACAATATTGCTAGTAATCTTAATTTGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCTTCAGGTAGTATGGGGGGTGGTGGTGATGATGATAGCAGTCATAATAGCCAGAATCGTCATGGGTCACAAGGTGGTGGATGTGACCCAACAATGTACCACCACTCTCATGACTTTTAG 1497 0.5063 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGGNSRAGPGTARPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPLHHHHHHHHHHDLGIAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHLAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREESNANANANNNNNNNNNNASSAAAIYPPMSEDHSSSSSGNNNIASNLNLDSRLVYLNLGASGSMGGGGDDDSSHNSQNRHGSQGGGCDPTMYHHSHDF. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04768 498 MobiDBLite consensus disorder prediction 464 498 - -
Seca8g04768 498 Gene3D - 248 366 IPR036770 -
Seca8g04768 498 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Seca8g04768 498 Pfam Domain of unknown function (DUF3420) 196 260 IPR024228 -
Seca8g04768 498 MobiDBLite consensus disorder prediction 468 484 - -
Seca8g04768 498 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Seca8g04768 498 CDD BTB_POZ_NPR_plant 8 161 - -
Seca8g04768 498 SMART BTB_4 25 161 IPR000210 GO:0005515
Seca8g04768 498 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
Seca8g04768 498 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Seca8g04768 498 SMART ANK_2a 283 313 IPR002110 GO:0005515
Seca8g04768 498 SMART ANK_2a 318 347 IPR002110 GO:0005515
Seca8g04768 498 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Seca8g04768 498 SUPERFAMILY POZ domain 8 159 IPR011333 -
Seca8g04768 498 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Seca8g04768 498 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Seca8g04768 498 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 497 IPR044284 GO:0099402
Seca8g04768 498 MobiDBLite consensus disorder prediction 405 443 - -
Seca8g04768 498 FunFam regulatory protein NPR5 isoform X2 249 366 - -
Seca8g04768 498 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04768 Seca-Chr8 132968686 132971728 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca8g04768 BTB 7.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04768 K14508 - zju:107433767 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04768 8 132968686 132971728 Seca8g04768 8 132968686 132971728 ECH
Seca2g03870 2 118909528 118911774 Seca8g04768 8 132968686 132971728 PCT