Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04752 ATGATCTGTTTTGTTCTAATGGCAGTTACTACAGTTGATTCCGGTAGCAAGGCTTTAGAGTTTCTAGGCTTGCGTAGGAATGATCAAAGTGACCCAAATACACCATCTGTTTCTCCCAACAATCATCAGGAAGTGGAGGTGAACCTTGTAATAACAGACTACTGTATGCCTGGCATGACAGGCTATGATTTACTCAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATTCCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGATGCTTGGAGGAAGGTGCAGAGGAGTTTTTCTTGAAGCCAGTGAGGCTGTCAGATTTGAATAGGCTTAAACCCCATATGATGAAGACCAAGTTGAAAGATCAAAAACAAAAAACCCAAGAAAAGCATGAAAACTCAGAAGCTCAACAGCAACAGCAACAACAAATACAAAATGAACAGCAACCAGCACCACAACCACAATACCAACAACCACACTTTCAGCCAACAGAAGAACAACAGCAACAATCACTACAACAGGCCATCAATAGTAAGAGGAAGACAATGGAACATGGGATTTCCCCTGAAACTGACAGAACAAGACCAAGGTACAGTGGCATACCCACTGCAGTCGATGAATCATTGCCAAATAATTTTCTTGAATTCCAAAATGTAATTCCAATATAA 681 0.4009 MICFVLMAVTTVDSGSKALEFLGLRRNDQSDPNTPSVSPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLNRLKPHMMKTKLKDQKQKTQEKHENSEAQQQQQQQIQNEQQPAPQPQYQQPHFQPTEEQQQQSLQQAINSKRKTMEHGISPETDRTRPRYSGIPTAVDESLPNNFLEFQNVIPI. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04752 226 SUPERFAMILY CheY-like 9 128 IPR011006 -
Seca8g04752 226 MobiDBLite consensus disorder prediction 114 208 - -
Seca8g04752 226 Pfam Response regulator receiver domain 42 112 IPR001789 GO:0000160
Seca8g04752 226 Gene3D - 5 201 - -
Seca8g04752 226 ProSiteProfiles Response regulatory domain profile. 1 120 IPR001789 GO:0000160
Seca8g04752 226 MobiDBLite consensus disorder prediction 138 185 - -
Seca8g04752 226 CDD REC_typeA_ARR 9 115 - -
Seca8g04752 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 172 IPR045279 GO:0009736
Seca8g04752 226 MobiDBLite consensus disorder prediction 114 137 - -
Seca8g04752 226 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04752 Seca-Chr8 132438484 132440751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04752 9 209 Response Regulator Gene Family AT3G57040 61.951 2.47e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g04752 Response_reg 5.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04752 K14492 - gmx:100814494 259.225