Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04748 ATGCAATTTGCTGAAAATGTTGGGGATAGCAGAAAGCTCAAGCGCAAGATTGAGGAGCCACCTACCTCTGATGCTGCAAACTCAGAGCCATTACTATCTCTGAGTTTGGGTAGTAACAGAGTTTTCCCAACATTCAAACCCAATGATGAAGAAGTGATAACCATGAGAGAATTCCCTTGCAAATTTTGCAACAAAAAGTTCCCAAGTTCTCAAGCTCTTGGTGGACACCAAAACGCTCACAGGCGTGAAAGGGTGCTCTCACGGTTGGGCAAGGAATTTAATTTGGGCACTTTTGGGCTTGGTGTTCATCACCTGTGTCCTTACTCTATGATGGCAAATCACCAATACCCTTTTAATGGGCCACCCTTTTATCATGCAACCCACATGAACCACCCCATGGCTCATCCTCACATGCCATGGCCTCGTTTTGGACCTGGCTATGCCAACCAATTTGGGATGACCAACTCTGGGGGTGCAAGTGCTCAAATTGCACAGAATTTGTTCCCCAACGATGTGGGATTTGGTTATGAACTTGATCAGGTTTCTCCACATGCTGTTGGAGATGCAACTAATAGAGTTCCCATGGCTCCAACTGGTCTTGGCACCCTCATGGGAAATCAATATGTTGGGAACCAGCAATTTTCATCCTCAGTGCCTGATTTATCCCTTAACCTTTAA 678 0.4558 MQFAENVGDSRKLKRKIEEPPTSDAANSEPLLSLSLGSNRVFPTFKPNDEEVITMREFPCKFCNKKFPSSQALGGHQNAHRRERVLSRLGKEFNLGTFGLGVHHLCPYSMMANHQYPFNGPPFYHATHMNHPMAHPHMPWPRFGPGYANQFGMTNSGGASAQIAQNLFPNDVGFGYELDQVSPHAVGDATNRVPMAPTGLGTLMGNQYVGNQQFSSSVPDLSLNL. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04748 225 Gene3D Classic Zinc Finger 47 93 - -
Seca8g04748 225 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca8g04748 225 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Seca8g04748 225 MobiDBLite consensus disorder prediction 8 22 - -
Seca8g04748 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Seca8g04748 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 49 147 IPR044246 GO:0009788
Seca8g04748 225 Pfam C2H2-type zinc finger 58 83 - -
Seca8g04748 225 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04748 Seca-Chr8 132302472 132303170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04748 50 95 C2H2 Transcription Factor Family AT1G80730 52.174 3.48e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g04748 zf-C2H2_6 5.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04748 - - aprc:113874385 194.512