Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04736 ATGGGAATCTGTCATGGAAAGGCTATTGAGACCCAACAAAGTGAAGGAGAAAACACAGTGTTCCCTGGTGAGGTGCCAAGTTCCCATGTTGCAACTAAATCCCCATCAAAGTTTCCATTCTACACCCCAAGCCCTTTGCCAAGTTTGTTCAAGAACTCACCAGCATATTCAAACTCAAACTCAAGTGTGAGTTCAACCCCTTTGCGCTTCTTCAAACGCCCTTTCCCTCCTCCTTCCCCTGCAAAGCACATTAAGGCTTTGCTTGCTCGCCGCCATGGTTCTGTTAAGCCAAACGAGGCCTCTATTCCTGAAGGCAGTGAATGTGAGGAGGTTGGGTTGGATAAGAGTTTTGGGTTCTCTAAGCAGTTTGTAAGCCATTATGAGCTTGGTGAAGAGGTGGGGCGTGGTCATTTTGGATATACTTGCTCTGCTAAGGCCAAGAAGGGTGCCTTCAAAGGCCTTGATGTGGCTGTCAAAGTCATTCCAAAATCTAAGATGACCACAGCAATTGCCATAGAGGATGTAAGGAGAGAAGTGAAGATATTGCGTGCTCTAACAGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGAGAATTGCTGGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGACGATGCCAGAGTTGTCATGATTCAAATATTAAATGTGGTAGCTTTTTGTCATCTGCAGGGCGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATGCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTAAAGCCAGATGAGAGGTTGAATGATATTGTAGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGTCGTCCCTTTTGGGCCCGGACAGAATCTGGTATATTTCGGGCGGTCCTGAAGGCAGATCCAAACTTTGATGAAGCTCCTTGGCCTTCTTTATCTGCTGATGCAATAGATTTTGTAAAGAGACTGTTGAATAAGGATTATCGTAAAAGATTAACTGCAGCTCAGGCACTCAGTATGTCTTCCCATTTCCAATGGTGGCATATATATGGTATTAATTTTCTTTCTTTTTGA 1212 0.4266 MGICHGKAIETQQSEGENTVFPGEVPSSHVATKSPSKFPFYTPSPLPSLFKNSPAYSNSNSSVSSTPLRFFKRPFPPPSPAKHIKALLARRHGSVKPNEASIPEGSECEEVGLDKSFGFSKQFVSHYELGEEVGRGHFGYTCSAKAKKGAFKGLDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEDDARVVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKDENATLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPNFDEAPWPSLSADAIDFVKRLLNKDYRKRLTAAQALSMSSHFQWWHIYGINFLSF. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04736 403 Pfam Protein kinase domain 127 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04736 403 Gene3D Phosphorylase Kinase; domain 1 119 216 - -
Seca8g04736 403 SUPERFAMILY Protein kinase-like (PK-like) 124 386 IPR011009 -
Seca8g04736 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Seca8g04736 403 MobiDBLite consensus disorder prediction 13 36 - -
Seca8g04736 403 FunFam CDPK-related kinase 1 120 215 - -
Seca8g04736 403 FunFam CDPK-related kinase 3 119 291 - -
Seca8g04736 403 SMART serkin_6 127 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04736 403 FunFam Calcium-dependent protein kinase SK5 299 392 - -
Seca8g04736 403 CDD STKc_CAMK 126 385 - -
Seca8g04736 403 Gene3D Transferase(Phosphotransferase) domain 1 217 394 - -
Seca8g04736 403 PANTHER SERINE/THREONINE-PROTEIN KINASE 113 392 - -
Seca8g04736 403 ProSitePatterns Protein kinases ATP-binding region signature. 133 159 IPR017441 GO:0005524
Seca8g04736 403 ProSiteProfiles Protein kinase domain profile. 127 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04736 Seca-Chr8 132122707 132129046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04736 1 385 EF-hand Containing Proteins AT3G50530 67.735 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g04736 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04736 - - vum:124833383 673.7