Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04735 ATGGAAAACTCTGAGCTCTTCCTCCAATTCCTTGCCAACAGCAACAGTTCCTCCTTCAATTCTGCATCATCTTATGGATTCCCAGCTTCAGCAACAGCTATGAAGCAACATAGATTCTGCAATTCCTCTTCTTTTTACCCTTTGGAAGCATCTGATCAAATTGCTGCCGAAGCACCTTCCCATCAGGATAAAGCCCTTGCTGCTTTGAAGAATCACAAGGAAGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATAAGCTTCGCACTCTTCTTCCTTGTAATTCTAAGACAGACAAAGCTTCACTTCTTGCAAAGGTGGTCCAAAGAGTGAAAGAGCTGAAGCAACAAACATCAGAAATCACCGAAGAATTTGAAACCATTCCTTCAGAGACGGATGAGATTACGATTCTATCCACAAGTGGCAGTGATGGAAGGATCATATTCAAAGCCTCTTTGTGCTGTGAAGACCGCTCTGACCTAATCCCTGACCTCATCGAAATCCTAAGGTCTTTGAACCTGAAAACGCTTAAGGCTGAAATGGCAACGCTTGGAGGAAGAACTCGTAACGTTCTTGTGGTGGCTGCGGATAAAGATCACAGCATTGAATCGATCCAGTTTCTTCAGAACTCGTTCAAGTCTTTGCTAGAACGCTCTAATTCTAGTGAGAGATCCAAAAGACGCCGTGTCATGGACCGAAACTTGATGGCTTGA 720 0.4458 MENSELFLQFLANSNSSSFNSASSYGFPASATAMKQHRFCNSSSFYPLEASDQIAAEAPSHQDKALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITEEFETIPSETDEITILSTSGSDGRIIFKASLCCEDRSDLIPDLIEILRSLNLKTLKAEMATLGGRTRNVLVVAADKDHSIESIQFLQNSFKSLLERSNSSERSKRRRVMDRNLMA. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04735 239 SMART finulus 73 122 IPR011598 GO:0046983
Seca8g04735 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 140 IPR036638 GO:0046983
Seca8g04735 239 PANTHER TRANSCRIPTION FACTOR BHLH30 37 234 IPR045847 GO:0003700|GO:0006355
Seca8g04735 239 Coils Coil 106 126 - -
Seca8g04735 239 CDD bHLH_AtAIG1_like 62 139 - -
Seca8g04735 239 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Seca8g04735 239 Gene3D - 62 127 IPR036638 GO:0046983
Seca8g04735 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Seca8g04735 239 FunFam transcription factor bHLH30 62 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04735 Seca-Chr8 132071802 132074240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04735 5 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 59.825 4.30e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04735 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04735 - - gmx:100790009 317.39