Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04726 ATGTTATCTTCTCAGGCTCAGTCATGTACTATGATAGCTGCAACAATAGTATTTGTTGTAGCACAAGTAATTGTGGGAGCAAATACCCTTTCAGAAGCTGATAAGATAAGCGCTTTGCCTGAACAGCCACCAGTGAAATTCCAGCAATATGGTGGTTACATTACAGTTGATGAAGTGCAGAAGAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTCCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGTCCTTTCAAACCTAGTGAAAATGGTCTTTTGAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCATACTCTGCTAATAAATCTTTCTATGACTTTGTCAACGATGAAATGACAGCAAGGGATAATCTTGTTTTCCTACAACATTGGTTCACTAAATTCCCAGAGTACAAGAACAATGACTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAGACAAAGTTCAATCTCATGGGGATAGCAATAGGGAATCCTCTTCTAGAATTTAACACGGATTTTAACTCCAGAGCTGAGTTTTACTGGTCCCATGGACTAATATCAGATTCAACATACGAAATGTTCACTAAAGTATGCAACTATTCCCAAATTAGAAGACAATATCAAAATGGGAAACTTACTCCCATTTGTGCAGGAGTAAATAAACTAGTGGTATCGGAGGTTAGTAGATACATTGATACATATGATGTTACTCTTGATGTCTGTCTATCATCAGAAAATCAACAGGCTTATGTGCTGAATCAACTGACTCAACAACTGGTACATACATACATGCTTCATCCATTCTGTGACAATGTGCAGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACAATCACATACTTGAACAGAAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTTGTAGGGATCACCAGATGGTCAACTTGCAGTGGTTACAGGGTTCTCAGATATGACATGCAGAATCTGGAGATTCCAACCATTTCTATTCTAGGGGCACTTGTTAAGTCAGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTGATCCCATTACTTGGGACACGATCTCTGGTAAATGGATTAGCCAAGGAGTTGGGGCTGAATACAACAGTATCCTATAGAGCCTGGTTTAAGGGAAGTCAGGTAGCTGGATGGACTCAAGTATATGGAGACATTTTATCATTTGCCACCATAAGAGGAGCAGCTCATGAAGCTCCATTTACACAACCAGAGAGATCATTAGTGATGCTAAAAGCATTTTTGGAAGGAAAGCCACTTCCAACTATTCTCTGA 1449 0.4037 MLSSQAQSCTMIAATIVFVVAQVIVGANTLSEADKISALPEQPPVKFQQYGGYITVDEVQKRALFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNDYSWNKEANMLYLESPAGVGFSYSANKSFYDFVNDEMTARDNLVFLQHWFTKFPEYKNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLMGIAIGNPLLEFNTDFNSRAEFYWSHGLISDSTYEMFTKVCNYSQIRRQYQNGKLTPICAGVNKLVVSEVSRYIDTYDVTLDVCLSSENQQAYVLNQLTQQLVHTYMLHPFCDNVQQEGEKIDVCVEDETITYLNRKEVQEALHAKLVGITRWSTCSGYRVLRYDMQNLEIPTISILGALVKSGIRVLVYSGDQDSVIPLLGTRSLVNGLAKELGLNTTVSYRAWFKGSQVAGWTQVYGDILSFATIRGAAHEAPFTQPERSLVMLKAFLEGKPLPTIL. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04726 482 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Seca8g04726 482 Gene3D - 377 475 - -
Seca8g04726 482 Pfam Serine carboxypeptidase 42 475 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 FunFam Carboxypeptidase 29 479 - -
Seca8g04726 482 SUPERFAMILY alpha/beta-Hydrolases 28 480 IPR029058 -
Seca8g04726 482 FunFam Carboxypeptidase 376 475 - -
Seca8g04726 482 Gene3D - 328 362 - -
Seca8g04726 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 462 IPR001563 GO:0004185|GO:0006508
Seca8g04726 482 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04726 Seca-Chr8 131896615 131900229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04726 336 478 Calmodulin-binding Proteins AT2G22960 30.070 2.36e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04726 K16297 - gmx:100805028 816.609