Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04716 ATGACCACGATGAATTCAGGGTCACTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGTTCTCATTGACCATGCAATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTAAGGAGGGGTTGGATTGCAGAACGCTTGTTCTCTTGCAGGTTGACTCGCTGTTCAAGGTGTGACAGAGATGAGTTGGCTGTGTCTGTGGATGATGGTGTTGGTGATGGTGGTGGTGGTTGCAATTGCAAAAGCGGCTCTGATGGAAATGGTACTGAGCTTGAGTTTGAAGCGGGGGCAAGTAAAGAGAGCAAAGTCAATAGTTGCAGAGATGATCATGGAGAGATGAATATGAACCAAGTTAGCAATTACAGCTTTGGGGAGGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTGATTCAATGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTGTGGATCTCCTGAAGGCAACCGAGATTGGAAAAGCTGTTAATCCTCTTCGAAAGCTTGGATCAAAGGATATTTCTCAACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGGTTCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAACTCAAACTGGTTCAATGGAACTCTCGCAGTTCTTTGATGGCATGGATGATGATGGAAGTGAGTTGACTATGGAATTTCGTATGCTTAGTCTTGCTATCTTTTGCTCTATGGTTCTTTATTTGAATTCCCCACTTCTTAGTTTGATGGTTGTGAATGGGGAATTCTGTTTTAGATCCTCAACAAAGTGGGGAATTCATCAAGAACCTTGGCAGAAGACCATGTATGAACAGTCAAAATATAGCAAAGCCAAATAG 1041 0.4304 MTTMNSGSLDYWRNYFRGANADIFVLIDHAIMVAASDCPKEFKLRRGWIAERLFSCRLTRCSRCDRDELAVSVDDGVGDGGGGCNCKSGSDGNGTELEFEAGASKESKVNSCRDDHGEMNMNQVSNYSFGEAEALTDEIEEESQYFEEVLRIRDIVLNFKEESDSMLFESLRRLQLMELTVDLLKATEIGKAVNPLRKLGSKDISQLARTLINVWKGMVDEWVKATTPIAGSEGTPDSVNPSVVDEEEGLPSPPMDEGALFATQTGSMELSQFFDGMDDDGSELTMEFRMLSLAIFCSMVLYLNSPLLSLMVVNGEFCFRSSTKWGIHQEPWQKTMYEQSKYSKAK. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04716 346 CDD TFIIS_I 147 220 - -
Seca8g04716 346 Pfam TFIIS helical bundle-like domain 171 219 IPR017923 -
Seca8g04716 346 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 145 233 IPR035441 -
Seca8g04716 346 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 230 IPR035441 -
Seca8g04716 346 SMART TFS2_5 146 221 IPR003617 GO:0005634
Seca8g04716 346 MobiDBLite consensus disorder prediction 230 252 - -
Seca8g04716 346 ProSiteProfiles TFIIS N-terminal domain profile. 147 222 IPR017923 -
Seca8g04716 346 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 282 IPR044805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04716 Seca-Chr8 131763230 131767864 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca8g04716 Med26 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04716 - - gmx:100775579 423.32