Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04713 ATGCTAGCATTATCTCCTTCTCCTATGTTCTCTACCATTGGTTATTGGCCCTATGAGGAGCCTATAAGCCATAGCCAGAACAACTACTTCTACAAACACACAGAGGACTCAGAACTATTTCATCATCAGCCACAGGTTGAGATCCAAAATTCCACTCCCTCACCAGCCATAAGCAGTGATCTTAGCATGGTCAAGAAGCTTATTCACAATGCAAGTGAACGTGATCGCAGAAAGAAGATCAATGCTCTGTATTCTTCACTTCGTTCACTTCTTCCTGTGGCAGATCAAATGAAGAAGTTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAGTACATACCGGAGTTACAGAAGCAGGTGGAAGGACTAACTAAGAAAAAGGAAGACATCTTATTGAGAATTTCTAAGCAAGGCGATGCAGTGATCAGCAAAGAATCTCAAAGGAAGATTGTCCATTCCAAATCCAAACCCAACTCTGGTTTTGTAGTTTCAACAAGTAGACTCAGTGATAGCGAGGCTTCTATTCAGATTTCATCTTATTCTGTCCACAAGATTCCACTTTCTGAGATCTTGCTGTGTTTGGAAAATGATGGCCTTGTACTGCTAAATTCTTCTTCCTCTGAGACATTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCAGAGGTTCTGTATGAGAAGCTTTTGTCAATAATTGATAAAAATGGGAACTTTCTAGTGAAATGA 753 0.4037 MLALSPSPMFSTIGYWPYEEPISHSQNNYFYKHTEDSELFHHQPQVEIQNSTPSPAISSDLSMVKKLIHNASERDRRKKINALYSSLRSLLPVADQMKKLSIPATISRVLKYIPELQKQVEGLTKKKEDILLRISKQGDAVISKESQRKIVHSKSKPNSGFVVSTSRLSDSEASIQISSYSVHKIPLSEILLCLENDGLVLLNSSSSETFGGRTFYNLHFQVDKTQRLESEVLYEKLLSIIDKNGNFLVK. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04713 250 Pfam Helix-loop-helix DNA-binding domain 66 117 IPR011598 GO:0046983
Seca8g04713 250 FunFam Transcription factor ORG2 60 145 - -
Seca8g04713 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Seca8g04713 250 SMART finulus 70 122 IPR011598 GO:0046983
Seca8g04713 250 CDD bHLH_AtORG2_like 65 137 - -
Seca8g04713 250 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 239 - -
Seca8g04713 250 Gene3D - 59 148 IPR036638 GO:0046983
Seca8g04713 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04713 Seca-Chr8 131734709 131736138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04713 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.580 1.71e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04713 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04713 - - vvi:100262373 281.952