Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04712 ATGTTAGCATTATCTCCTTCTCCTATGTTCTCAACCATTGGATATTGGCCCTTTGATGAGGAGCCTATAAGCCAAAGCCAGAAAAACTACTTCTACAAAGACACTGAGGACTCATTAGAACAATTTCATCATCAGTTGTCTTCATCTCATCAGCCACAGGGTGAGATCCAGAATTCCACTCCCTCACCAGCCATAAGCAGTGACCTTAGCATGGTTAAGAAGCTTATTCACAATGCTAGTGAACGTGATCGCAGAAAGAAGATCAATGCTATGTATTCTTCACTTCGTTCACTACTTCCTAAAAAATTGAGCATTCCAGCAACAATTTCACGAGTCCTAAAGTACATACCGGAGTTACAGAAGCAGGTGGAAGGACTAACTAAGAAAAAGGAAGAGATCTTATTGAGAATTTCTAAGCAAGGGGATGCAGTGATCAGTAAAGAATCTCAAAGGAAGATTGTCCATTCCAAATCCAAACCCAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAATGAGGCTACTATTCAGATTTTATCTTATACTGTCCACAAGATTCCACTGTCTGAGATCTTGCTGTGTTTGGAAAATGATGGCCTTGTACTGCTAAATTCTTCTTCCTCTGAGACACTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCGGAGGTTCTGTATGAGAAGCTTTTTTCAATAATTGATAAAAATGGGAACTTTCTAGTGAAATGA 762 0.395 MLALSPSPMFSTIGYWPFDEEPISQSQKNYFYKDTEDSLEQFHHQLSSSHQPQGEIQNSTPSPAISSDLSMVKKLIHNASERDRRKKINAMYSSLRSLLPKKLSIPATISRVLKYIPELQKQVEGLTKKKEEILLRISKQGDAVISKESQRKIVHSKSKPNSGFVVSTSRLNDNEATIQILSYTVHKIPLSEILLCLENDGLVLLNSSSSETLGGRTFYNLHFQVDKTQRLESEVLYEKLFSIIDKNGNFLVK. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04712 253 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 239 - -
Seca8g04712 253 SMART finulus 78 125 IPR011598 GO:0046983
Seca8g04712 253 Gene3D - 67 151 IPR036638 GO:0046983
Seca8g04712 253 CDD bHLH_AtORG2_like 73 140 - -
Seca8g04712 253 FunFam Transcription factor ORG2 68 148 - -
Seca8g04712 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 137 IPR036638 GO:0046983
Seca8g04712 253 Coils Coil 116 136 - -
Seca8g04712 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 119 IPR011598 GO:0046983
Seca8g04712 253 Pfam Helix-loop-helix DNA-binding domain 74 120 IPR011598 GO:0046983
Seca8g04712 253 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04712 Seca-Chr8 131714747 131716387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04712 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.684 1.07e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g04712 HLH 9.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04712 - - vvi:100262373 251.906