Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04688 ATGAGTCGTGCATTATGGGATTCCTTATGGGATATGGGCAGGTGCAAACAGGGCATGAGGAAGTGCAACCCAGCCATGGGCCTAAGATTTAGCAAGTATATTCTAGAAGGGGTAGGAAGGGAATTGCTCAGAGCAAAGGAGGTGAGGGCGAGCTGCCATAGCACTGACTATGATATTAATGATGATTTAAGCTTTTACCATTTATTGTATGCACGTAAAATCGACTTTTTTTTACAGGTTACTCGATCCATTGGTGATGACGATCTGAAGCCTGCTGTAACTGCAGAGCCTGAGATAACCGAGACTACGTTATGTGAAGAGGATGAATTTCTGGTCATGGCTAGTGATGGCCTCTGGGATGTCATAAGCAGCATGGAGGTCATAAATATAATAAAAGACACTGTTAAAGAGGCTGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATCACAGTTATTGTCGTTTTTTTACGTCCTGTATCTACTGCAGAGAGAATTTATTAG 528 0.4299 MSRALWDSLWDMGRCKQGMRKCNPAMGLRFSKYILEGVGRELLRAKEVRASCHSTDYDINDDLSFYHLLYARKIDFFLQVTRSIGDDDLKPAVTAEPEITETTLCEEDEFLVMASDGLWDVISSMEVINIIKDTVKEAGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04688 175 SUPERFAMILY PP2C-like 75 167 IPR036457 -
Seca8g04688 175 Gene3D - 35 170 IPR036457 -
Seca8g04688 175 PANTHER PROTEIN PHOSPHATASE 74 163 IPR015655 GO:0004722|GO:0006470
Seca8g04688 175 Pfam Protein phosphatase 2C 73 158 IPR001932 -
Seca8g04688 175 ProSiteProfiles PPM-type phosphatase domain profile. 1 165 IPR001932 -
Seca8g04688 175 SMART PP2C_4 1 163 IPR001932 -
Seca8g04688 175 CDD PP2Cc 78 165 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04688 Seca-Chr8 131291672 131293122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04688 78 175 PP2C-type Phosphatase Gene Family AT2G40860 83.673 4.84e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04688 - - gmx:100785390 184.882