Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04686 ATGGGGATAGAGATTGTGGAGCCTAACACATGCATCAGGGGTTGCTGCACCAGCTCCTCTATTCCTCTTCATCTCCCTCCTTCCTCTTTTACTCTTCTCTCACCCATTGCCCGAGGGGCTGAGAGTGTTGTTTATGAAGGGACTTTGGATGGTGAGAAGGTTGCGGTGAAGAAACCCATCTTGTCAGTTTCAGAAGACATTAATAAGTTCCATAAAGAATTGCAATTGCTATGCAAGCTAGATCACCCGGGAATAGCAACACTAATTGCTGCCCATGCAAAACCACCCAATTACTTGTTTTTCTTCAAGTTATATGAATCTTCGAATCTCGCACAGAAGTTACATGTGGAAGAATGGGCCCCAACTATCAATCATGCACTTATGATAACAATGCAGTTAGCAAAGGCTTTGCAATATCTGCATAACCTCGGGATTTTACATAGAGATGTGAAACCAGCGAATATTCTTCTTGACAAAAATCTTTGTCCGCACCTCACTGATTTTGGTTTGGCCGAATACAAGAATGATATTAAGGGAGTTTCTCTTCAGAATTGGAAGTCTTCTGGAAAGCCTACTGGTGGTTTTCACAAAAAGAATATGGTTGGAACACTCATTTACATGGCACCTGAAATATTAAGAAAGGATTTACACACAGAAAAATCAGACGTGTACAGTTTTGGGGTATCAATCAATGAACTTCTTACTGGTGTTGTGCCATATACTGATCTTCGTGCGGAAGCACAGGCTCACACAGTGCTTGAGATGAACTATACTGAGCAGCAACTAACAGCGGCTGTTGTTTCTGATGGATTACGGCCAGTCCTTGCTGGTGAGGAGTTGGGTATACCCTCAAGATTATTATCAATGATACAGAAGTGCTGGGATGCAAATCCTAAAAGCAGACCTTCCTTTGATGATATTGTCAAGGAACTTGATTTTATTATGGAACAGAGGAAGATAAAGATGGTAGAAGACGTGCATATAAGACCTTGTAACTTGCATGTTGATCAACTTGTGGACAAGACTTACCTTAAGGCTTATCAAGAAAGTATTAGTTGGTCCACTCAAGGTGAACTTTTGGCCAGGAATGCCTCTAGTGCAACTGTTTCTGGTTTGAGAACATGGTCTGAGTCTTATGATGAGCCTTTGGCATACCATCCCATGCTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGACTATGGAGGACACACATTTCCTTCTGCCCCATATTTGCAATGAAAAGGATGTCTATGCTTTTGGTATTTTTGATGGCCACAGAGATTTCTATTCCTACCTACATGGGATATCAGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTATCAAGCTTGTTATGTTACCCTAG 1371 0.4238 MGIEIVEPNTCIRGCCTSSSIPLHLPPSSFTLLSPIARGAESVVYEGTLDGEKVAVKKPILSVSEDINKFHKELQLLCKLDHPGIATLIAAHAKPPNYLFFFKLYESSNLAQKLHVEEWAPTINHALMITMQLAKALQYLHNLGILHRDVKPANILLDKNLCPHLTDFGLAEYKNDIKGVSLQNWKSSGKPTGGFHKKNMVGTLIYMAPEILRKDLHTEKSDVYSFGVSINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDGLRPVLAGEELGIPSRLLSMIQKCWDANPKSRPSFDDIVKELDFIMEQRKIKMVEDVHIRPCNLHVDQLVDKTYLKAYQESISWSTQGELLARNASSATVSGLRTWSESYDEPLAYHPMLSWGSYATCGRRETMEDTHFLLPHICNEKDVYAFGIFDGHRDFYSYLHGISVCVCVCARARIKLVMLP. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04686 456 Gene3D Transferase(Phosphotransferase) domain 1 18 339 - -
Seca8g04686 456 Pfam Protein kinase domain 32 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04686 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 314 - -
Seca8g04686 456 Gene3D - 385 448 IPR036457 -
Seca8g04686 456 FunFam Protein kinase and PP2C-like domain-containing protein 20 344 - -
Seca8g04686 456 SUPERFAMILY PP2C-like 382 430 IPR036457 -
Seca8g04686 456 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04686 456 SUPERFAMILY Protein kinase-like (PK-like) 22 332 IPR011009 -
Seca8g04686 456 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04686 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04686 Seca-Chr8 131283725 131289908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04686 99 429 PP2C-type Phosphatase Gene Family AT2G40860 61.562 1.44e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Seca8g04686 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04686 - - gmx:100785390 751.51