Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04684 ATGAGAGAAGACGACTCAAATTGGTTCTCCAAATGGGAAGAGGAACTCCCTTCCCCAGAGGAACTCATGCCTTTATCCCAAACCCTAATAAGCCCCGATCTCGCCATAGCTTTCGACATAACAAACACCACACCACACCACCACCAACTTCCCCCTTCACCCAATCCTCTTCCTTCTCCGCCCAACCTAGCCCAACCCGAATTCGCGGATTCCGCCGAACTAGGTTCGGGTTCAGCCGGAGAAGAACCAGCGCGGACCCTCAAGCGTCCTCGCCTGGTGTGGACCCCACAGTTACACAAGAGGTTCGTCGATGCCGTCGCTCACTTAGGGATCAAGAACGCGGTACCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACAAGGGAAAACGTCGCTAGCCACTTGCAAAAGTATCGCCTCTACTTGAAGCGCATGCAGGGGTTGTCTGCTGGTGGTGCTGGCGGAGGCGTTGCCGGAGGAGGGGCTGGTGTCTCTGCTGATCCTGCCACGGACAATTTGTTCGCCAGCTCGCCGGTGCCGCCGCATTTCTTGCATCCGGCGGGTAGGCCTGGTTCCGACCATTTCTTGCCGTATGTTCCGGTTCCGGCCCTGCACCACCACCATCACCCGCAGCAGATGGCTGTGGCTGCTGGTCACCCGCAGTATCACAGGCAGGTGGGGCATTTTGAGCTTCCCTACCTGTCTAGGCAGCCTCAGAGCCTCCACAGGATGGGGGCACCTGTGCACAATCCGGTGCCTGGTTATCCGGAGGACATGGAATCGGCGAATGCTTCTGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 846 0.5674 MREDDSNWFSKWEEELPSPEELMPLSQTLISPDLAIAFDITNTTPHHHQLPPSPNPLPSPPNLAQPEFADSAELGSGSAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGAGGGVAGGGAGVSADPATDNLFASSPVPPHFLHPAGRPGSDHFLPYVPVPALHHHHHPQQMAVAAGHPQYHRQVGHFELPYLSRQPQSLHRMGAPVHNPVPGYPEDMESANASGGRKVLTLFPTGDD. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04684 281 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Seca8g04684 281 MobiDBLite consensus disorder prediction 49 63 - -
Seca8g04684 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Seca8g04684 281 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 268 IPR044841 GO:0003700|GO:0006355
Seca8g04684 281 MobiDBLite consensus disorder prediction 40 88 - -
Seca8g04684 281 FunFam Two-component response regulator 85 148 - -
Seca8g04684 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 145 IPR017930 -
Seca8g04684 281 Gene3D - 86 148 - -
Seca8g04684 281 SUPERFAMILY Homeodomain-like 86 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04684 Seca-Chr8 131262200 131263045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04684 1 281 G2-like Transcription Factor Family AT3G10760 55.331 5.18e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g04684 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04684 - - cpap:110811289 393.66