Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04671 ATGTGTTCCATTGTTGATCCTACGAATCCTTTTGCCATTGATATGGTTTTGTTGGATGTTGAGGTTGGTGGTAAGATCCAGGCCACAATTCGGAAGCCAATGATGAAGAAGTTTAGGAATGTAATTTCTGAGGGTGAAGTTTACACAATGTTGAATTTTGCTGTTATTAAAAATGTTGGAAGTTACCGTGCCTGTAGACATGAGTTTAAACTTCTGTTTAGTGCAAAGACTAAGGTATTCCCTGCCCAATCTGATGTGATACCTACTGTGGGTTTATCTCTTATGACCACTGAGCAGATTGCAAAGACCAATGGAGAGTCAAATTACTTATTTGACCTGATGGGTATACTGACAGTTGTTTCTGCTGAGAAAGTTGTTGAAACTGATGGGAGGAAAACTAGAATGATGGAAATGGAGCTGATGGATGACAAGGGTAGAATGAGGTGCACAGTTTTTGGGCACTATGTGGACACATTGAAAGCTTTTGTTGAATCAGGTGTTACCCCGTTACCTGTCGTTGTTGTTCAACTTTTCAAAGTCAGATTGTATAAGGGTAATGTTGTGCTTCAGAATGTTAATAATACTTCAAGGATTATGTGGAATCCTGATACTCCTGATGCCAATGAGTTTAGGAATGGTTTGGCTTGCCATGGAGTTGACTCTGATGTGGAGATTGGGGTCATAGAGGCAGGGAATCGTGTTGTTCCTCTGCTTGATGATTTTCTCCGGTTGTATCCCAGGAAAACCCTTAATGAGTTGCAGATAACTGAGGAGGATGGGACCTTCATAGTACATGGAACAATTGTTTCTGTTTTGAAGGAAGGTCAATGGTGGTATGGAGCTTGCAAGTGTCACAAATCAGTGACTCCTGATGGTGGACTTTATTACTGTTCTAACTGTGCGACACATGTTGTTGAAGTTACCCCAAGATTTAAGCTGAAGGTTGAAATTTTTCATTGGGATGATTCTGCATGTTTGATTCTCTTTGACTCGGACTGTGTGTATCTTTTGGGAAAGACTTGCAAGGAGTTGGTTGCAGAATCAAGGGCCTTGAATGCGGGTGAACAACCTTCTGAATTTATGGCATTGGTTGGGAAGGAGCTTCTATTCAAGGTGGAGAAAACTGCTGACTATGCTTTCAGTTATGATGACTCTTTCAAGGTTAGGAGGGTGTGTGATGACAAGGAAATTATTAAGCAATTCAAGAAAGAAAAATCTATTGGGACCCCCCTAAAGTCTAAGTTTCAGCCTCCTTTTCCTGACCTTGATGCTGAAGAAAATGCTGAGGATCTAAAGCATGTCACACCAGATGGCATTGATAATAGTGGTGAAGGAGATGGTATTTCGTCTGGATTCATTGGTGCGTCCTCCAGCACTAATTTGCAGTGTTCTATTCTCAGCAGCTCCAGTGTTGGATGCTCCTATCATAGCATTGGTGATGATACTGATGAAGACACCCCACTGTCATTTAAGCGCCTGAAGATGAACCCAGTGAAGCTGGAGGAAGACTAG 1512 0.4167 MCSIVDPTNPFAIDMVLLDVEVGGKIQATIRKPMMKKFRNVISEGEVYTMLNFAVIKNVGSYRACRHEFKLLFSAKTKVFPAQSDVIPTVGLSLMTTEQIAKTNGESNYLFDLMGILTVVSAEKVVETDGRKTRMMEMELMDDKGRMRCTVFGHYVDTLKAFVESGVTPLPVVVVQLFKVRLYKGNVVLQNVNNTSRIMWNPDTPDANEFRNGLACHGVDSDVEIGVIEAGNRVVPLLDDFLRLYPRKTLNELQITEEDGTFIVHGTIVSVLKEGQWWYGACKCHKSVTPDGGLYYCSNCATHVVEVTPRFKLKVEIFHWDDSACLILFDSDCVYLLGKTCKELVAESRALNAGEQPSEFMALVGKELLFKVEKTADYAFSYDDSFKVRRVCDDKEIIKQFKKEKSIGTPLKSKFQPPFPDLDAEENAEDLKHVTPDGIDNSGEGDGISSGFIGASSSTNLQCSILSSSSVGCSYHSIGDDTDEDTPLSFKRLKMNPVKLEED. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04671 503 CDD RPA1_DBD_C 248 391 IPR047192 -
Seca8g04671 503 Pfam Domain of unknown function DUF223 16 85 IPR003871 -
Seca8g04671 503 SUPERFAMILY Nucleic acid-binding proteins 93 218 IPR012340 -
Seca8g04671 503 SUPERFAMILY Nucleic acid-binding proteins 245 392 IPR012340 -
Seca8g04671 503 CDD RPA1_DBD_B_like 112 211 - -
Seca8g04671 503 MobiDBLite consensus disorder prediction 476 503 - -
Seca8g04671 503 Pfam Replication factor-A C terminal domain 262 389 IPR013955 -
Seca8g04671 503 Gene3D - 7 84 IPR012340 -
Seca8g04671 503 PANTHER OS03G0429900 PROTEIN 10 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca8g04671 503 MobiDBLite consensus disorder prediction 478 503 - -
Seca8g04671 503 SUPERFAMILY Nucleic acid-binding proteins 11 83 IPR012340 -
Seca8g04671 503 CDD RPA1_DBD_A_like 1 79 - -
Seca8g04671 503 Gene3D - 86 221 IPR012340 -
Seca8g04671 503 Gene3D - 243 403 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04671 Seca-Chr8 131115735 131119694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04671 11 346 Core DNA Replication Machinery Family AT2G06510 22.626 9.30e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04671 - - lja:Lj1g3v3385890.1 387.497