Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04670 ATGCACCGGTTTGCCAATTCTGTCATAGAAGGTGAGGTTTACAATGTTACTCAGTTCACTGTCGCTCGAAATAGTGGGAAATTCAGAGCAACTCATCATGACCACAAGCTAACCTTTAATGCCAACACAAGGATTGTCCCATGTCTGACGGTTGCTATTCCAGGCACCGGTTTGAGCCTCGTGAAGACCTCTGATATCTTGAAGACCAAAGGTTCTTCTCAGTATCTTGTGGATTTCATGGGTATTGTTACTGGTATATCAGAAAAGCTGACTCTAAGAAAGGAAGGGAGGCAAACATGCCTCATGCTCATCGATATGGTGGACGAAATGGGAAAGATTAGATGTGCTATTTTCGGGCAACTCATTGACACTATGAAAGGGTTCCTTACTCTTTCCCGCTGCGGTCTGCCTGTGCTAATCATCCATCTTGCTCGTGTGAATCTTTACAGGGGGGAGGTGGGCATTCAAAACCTACTTAATGCCTCAAAGCTGTTCTGGAACCCTGAAATACCTGAGGCAATAAAGTTCAAAAATAGCCTCGCTGTCCACAAGATTGAAACCGATGTGGAGATCTCCCTGATTTCAGACAATAGGTGCCCTGTCTCTATGCGCGAGCAATTCCTCACAATGTTTCCCAGGAAACGTGTGGGGGACCTGAACCACATGCTCGAGGATGGAACTTATATAGTTCTTGGTACAATAACAGAGGTCTTCCAGGAAGACGACTGGTGGTACATAGCATGCTCCTGCATGAGGGCTGTTGACTTCAGCCAAGGTTTTCCCTATTGCGACGATTGCAAACGTGAGGTGTTCAACATGTCACATAGGTACAAGGTTAAGATACTTGTAGCTGATCAATCAGATTCCAGTGAACTAATCATGTTTGACTCGGCATGTTATTCTCTACTTAACATACCTTGCAAGGGGCTACTTTCGGACTATAAAGCTAGGAAGACTGATGGTTATCCACCTGAAATCTTAGATTTCATTGGCCAAGAGATGTTTTTCAGCCTTGAACTCAATGCAGAGAAATCTTCCTCATTCGATGGAGAGGCCATCAAAGTGCAGAAAATATGTTTAGATGCATGCATTCTCAATGAGTATAAGGAACTCATTGATGATGAGACTCCTTTAAAGCTAAAATTTGCTCTTGCCTTCTCCAAATTTGAGGATAGCGGCGGAAACAGCTGTTATTGA 1197 0.4386 MHRFANSVIEGEVYNVTQFTVARNSGKFRATHHDHKLTFNANTRIVPCLTVAIPGTGLSLVKTSDILKTKGSSQYLVDFMGIVTGISEKLTLRKEGRQTCLMLIDMVDEMGKIRCAIFGQLIDTMKGFLTLSRCGLPVLIIHLARVNLYRGEVGIQNLLNASKLFWNPEIPEAIKFKNSLAVHKIETDVEISLISDNRCPVSMREQFLTMFPRKRVGDLNHMLEDGTYIVLGTITEVFQEDDWWYIACSCMRAVDFSQGFPYCDDCKREVFNMSHRYKVKILVADQSDSSELIMFDSACYSLLNIPCKGLLSDYKARKTDGYPPEILDFIGQEMFFSLELNAEKSSSFDGEAIKVQKICLDACILNEYKELIDDETPLKLKFALAFSKFEDSGGNSCY. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04670 398 Pfam Replication factor-A C terminal domain 231 346 IPR013955 -
Seca8g04670 398 SUPERFAMILY Nucleic acid-binding proteins 58 184 IPR012340 -
Seca8g04670 398 SUPERFAMILY Nucleic acid-binding proteins 224 345 IPR012340 -
Seca8g04670 398 Gene3D - 52 190 IPR012340 -
Seca8g04670 398 Gene3D - 209 368 IPR012340 -
Seca8g04670 398 Gene3D - 1 49 IPR012340 -
Seca8g04670 398 Pfam Domain of unknown function DUF223 3 68 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04670 Seca-Chr8 131111159 131114302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04670 3 310 Core DNA Replication Machinery Family AT4G19130 22.124 1.25e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04670 - - lja:Lj6g3v0884310.1 280.026