Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04655 ATGTACGGCGGTGCTGAATCTGAATCTGAGAACATGAGGAGGCATAAACATGATGATGATGATATTATTGATAAGGAGAAGGAACAAGGTTCGTTCAAGAGCTGGGCGAAGCAAACAGAAGAGAGCTATCAGTTACAGCTGGCACTGGCGCTTTGCCTTTCCTCTCACTCTGCCTCTGCCGGTGACGCCAATTTCTTGGACTTGGAACCCACCCCTTCCTCTTCCGATTCCTCACAGGCACTCTCTCACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAGTTCTAGATGGCTTTTACATAATCCATGGGATGGATGCATATACATGGACTATAAGTACTGATCTGCAGAATGTTGGTATGATTCCATCGTTTGAATCACTAATGTCAGTTAAACCTTCTGATGACTCGTCAATTGTAGTGGTAGCTATTGATAAATCTAAAGATCCTGGTTTGAGAGAACTGCAAAGTAGGGTATTAAGTCTTTCAAGTAACTGGATTGCTACAGAAGATGCAACTGATCAGCTTGCAAATCTTGTATATAGTAGGATGGGGGGAGGATCTTCGACCGAGGACAATTTAGGTACACGCTGGAAGGAATGCACCCAAATTCTTAAAAGCTGCCTGCATTCTGTCATTATTCCAATTGGAAGCTTACCTATTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCTGACTTAATCAACCTACCATGCCGAATCGCTAGGGGCTGCAAGTATTGTAGGAAGGACATGGGTGCTTCTTGTATAGTGCAATTTGCTCCTGAGAGGGAGTGTATGATTGATTTAATAGGAAGGCCTGGAGCGAGATACCAACCTGATTCTTCCCTGAATTCTGCATCTTCAATGTTGATCCCTTCACCATTATGTCATCCAAAGTTCAAGGCAGTTGAAACAGCTGAATATACAAAGACATTAGCCCAATTGTATTTCTTGGACAGTCAAGCACTGCATCTTGTATTTGATAATATGTCAGGAGGTACAGTTGATTGTAGTGACAGAATGAATCTACAGAGAACTGAAATGTTTGGTGCAAACTATGCTGGTGGGAACAGCCATCTAACTGCATTGAGTCCTGGTACAGAGGAATATGTTTCTTTCAATGAAGCAAACCAGTCAGTAATGGATTATCCAAGTCATGAAGTTAACCTTGACGAGGAGGATCTGGACATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTCGGAACCGTACTTCGTGCGGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTAAAGGTGCAAGGTTTTGATTCTGAACGTTTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTACGTCATCCAAACATTGTACTTTTAATGGGTGCAGTTATTCAACCCCCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGCTTGTACGAACTTTTGCATACGCCCAGTGTTGGGTCATCACTCAGTGAGAGGCATCGTTTACGCATGGCATATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAGGCAAACACATTTCTTTCATCTAAAACAGCAGCCGGGACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACTATCAAATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTGCAGCAACCATGGAGAAATTTAAACCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAGATTCCAGGACATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGTCTACGTAA 1944 0.427 MYGGAESESENMRRHKHDDDDIIDKEKEQGSFKSWAKQTEESYQLQLALALCLSSHSASAGDANFLDLEPTPSSSDSSQALSHRFWVNGCLQYSDKVLDGFYIIHGMDAYTWTISTDLQNVGMIPSFESLMSVKPSDDSSIVVVAIDKSKDPGLRELQSRVLSLSSNWIATEDATDQLANLVYSRMGGGSSTEDNLGTRWKECTQILKSCLHSVIIPIGSLPIGLCVHRALLFKVLADLINLPCRIARGCKYCRKDMGASCIVQFAPERECMIDLIGRPGARYQPDSSLNSASSMLIPSPLCHPKFKAVETAEYTKTLAQLYFLDSQALHLVFDNMSGGTVDCSDRMNLQRTEMFGANYAGGNSHLTALSPGTEEYVSFNEANQSVMDYPSHEVNLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHTPSVGSSLSERHRLRMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRNLNPSQVVAAVGFMGKRLEIPGHVNPQVAALIELCWST. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04655 647 Gene3D Phosphorylase Kinase; domain 1 401 486 - -
Seca8g04655 647 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g04655 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Seca8g04655 647 CDD STKc_MAP3K-like 414 647 - -
Seca8g04655 647 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Seca8g04655 647 SUPERFAMILY Protein kinase-like (PK-like) 385 646 IPR011009 -
Seca8g04655 647 Gene3D Transferase(Phosphotransferase) domain 1 487 647 - -
Seca8g04655 647 MobiDBLite consensus disorder prediction 8 23 - -
Seca8g04655 647 Pfam Protein tyrosine and serine/threonine kinase 409 646 IPR001245 GO:0004672|GO:0006468
Seca8g04655 647 SMART serkin_6 408 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04655 647 FunFam Serine/threonine-protein kinase isoform 1 398 486 - -
Seca8g04655 647 PRINTS Tyrosine kinase catalytic domain signature 482 495 IPR001245 GO:0004672|GO:0006468
Seca8g04655 647 PRINTS Tyrosine kinase catalytic domain signature 589 611 IPR001245 GO:0004672|GO:0006468
Seca8g04655 647 PRINTS Tyrosine kinase catalytic domain signature 523 541 IPR001245 GO:0004672|GO:0006468
Seca8g04655 647 PRINTS Tyrosine kinase catalytic domain signature 570 580 IPR001245 GO:0004672|GO:0006468
Seca8g04655 647 ProSiteProfiles Protein kinase domain profile. 408 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g04655 647 Pfam Ethylene-responsive protein kinase Le-CTR1 78 281 - -
Seca8g04655 647 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 84 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04655 Seca-Chr8 130927420 130950782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04655 35 647 MAP Kinase Kinase Kinase AT5G03730 58.202 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca8g04655 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04655 K14510 - gmx:100807496 1085.86