Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04643 ATGATATGGTGCTATTATGCTTCACCTATGATGTATGGACAGACTGCAATAGCCATCAATGAGTTCCTAGACAAAAGATGGAGTGCTCCTAATAATGACCCAAGAATTCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAAGGCCAGAGGCATATTTACAAAAGACTATTGGTACTGGATATCTGTTGGTGCCCTTATAGGATTTTCTCTTCTTTTCAACATTTGTTTCGTTCTTGCTCTAACTTATTTAAATCCATTTGTAAGTTCAAAATCTATTATAGTGGAAGAGGAAGACAGTAGGAAAAGCATGACTGCATCTTCCTCAGGGAAAGAACTGGCAACAGCAAATTCAGAGAAGAATTCAGCTTCAAATGCTAAATGGTTTGAAGGTATTGATCTGGAAGTAAGAAACACCACACATAGCCCAATTACAAAAGCTGCAGAGTTTTCAAAGTCCAAGAAGGGAATGGTGTTGCCCTTTCAGCCTCTGTCACTTGCTTTTGAAAATGTGAATTATTACATCGATATGCCAAATGAAATGAAGAAACAAGGAATTGAAGAGAATAGACTCCAACTACTAAAAGATATAAGTGGTGCTTTCAGGCCTGGAGTATTAACAGCATTAGTTGGTGTAAGTGGTGCTGGAAAAACCACCTTGATGGATGTGCTTGCAGGAAGGAAAACTGGTGGTTATATTGAGGGAAGCATCAACATATCCGGTTATCCAAAGAACCAATCAACTTTTGCTCGGATTAGTGGTTATTGTGAACAAAATGATATCCATTCTCCAAATGTTACAGTCTATGAATCCCTTCTGTTTTCTGCTTGGTTGCGTCTCAGTAAGGAGGTTGATAAAGAAACACGAAAGATGTTTATTGAGGAAGTTATAGAGCTGGTTGAGCTACATTCAGTGAGGAATTTTATAGTAGGCCTTCCAGGAATAGACGGCTTATCAACTGAACAGAGAAAGAGGCTTACCATCGCTGTAGAGTTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACAACTGGTCTTGATGCTAGAGCTGCAACAGTTGTTATGCGTACTGTTAGAAATACAGTAGATACAGGGAGAACTGTTGTCTGCACAATTCATCAACCAAGCATTGATATATTTGAACATTTTGATGAGCTGCTTTTGATGAAGAGAGGTGGACAAGTGATATATGGTGGTCCTCTTGGTCGAAATTCTGAGAAGCTTATAGGGTACTTTGAGGCTATTACAGGAATTCCTGAGATTAAAGATGGATATAATCCAGCCACATGGATGCTGGAGATCACTTCTCCCTTAGTTGAATCTCAGCTTGATATAGACTTTGCTGAATTATACACAAAGTCAGACCTTTACCAAAAGAACCAGGAACTTATTAAGGAACTATGCACACCAGTACCTGGGACAAAAGACCTTTACTTTCCATCTAAATACTCCCAATCCTTTGTTACTCAATGCAAAGCTTGCTTCTGGAAACAGTACTGCTCCTATTGGAGGAATCCACAGTATAATGCCGTCAGATTATTCATCACTATAATTATTGGCATCATTTTTGGACTTATTTATTGGAATAAAGGAGATAAAACGCAAAAGGAACAAGACCTGTTGAATCTCCTTGGAGCTATGTATTTATCTGTTATTTTCCTTGGAGCCTCCAACACTAGCAGTGTGCAACCTGTTGTTGCAATAGAAAGAACAGTTCTCTACCGTGAAAGAGCTGCTGGAATGTACTCAGAACTGCCCTATGCAATTGGTCAGGTAGCAATTGAAGTAATTTATGTTGCAATCCAAAGTCTAGCCTATTCCATTATCCTCTACTGGATGATTGGGTTGCCATCACAAGTTGATAATTTCTTGTGGTTCTACTACTTCATATTCATGTCCTTCATGTACTTCACACTGTATGGAATGATGACTGTAGCTCTGACACCAAACCACCAAATTGCTGCAATTGTTATGTCTTTCTTCATCAGTTTCTGGAACCTGTTCTCTGGTTTTCTTATCCCAAGAACGCAAATTCCAATATGGTGGAGGTGGTACTATTGGGCATCCCCTGTGGCATGGACTATATATGGATTGGTGACATCACAGGTGGGTGACAAGAACAGTCCAATAGAAGTTCCTGGGTTTAAGCCAATGACAATAAAAGAGTACCTTGAGAAACGGTTGGGCTTTCAACATGACTTCCTTGGGGTTGTTGCTTTGACTCACATTGCTTTCAGCCTTCTCTTCCTTTTTGTATTTGCTTATGGCATCAGGTTCCTAAAGTTCCAGAAAAGATAA 2301 0.3959 MIWCYYASPMMYGQTAIAINEFLDKRWSAPNNDPRIPEPTVGKAFLKARGIFTKDYWYWISVGALIGFSLLFNICFVLALTYLNPFVSSKSIIVEEEDSRKSMTASSSGKELATANSEKNSASNAKWFEGIDLEVRNTTHSPITKAAEFSKSKKGMVLPFQPLSLAFENVNYYIDMPNEMKKQGIEENRLQLLKDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQSTFARISGYCEQNDIHSPNVTVYESLLFSAWLRLSKEVDKETRKMFIEEVIELVELHSVRNFIVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAATVVMRTVRNTVDTGRTVVCTIHQPSIDIFEHFDELLLMKRGGQVIYGGPLGRNSEKLIGYFEAITGIPEIKDGYNPATWMLEITSPLVESQLDIDFAELYTKSDLYQKNQELIKELCTPVPGTKDLYFPSKYSQSFVTQCKACFWKQYCSYWRNPQYNAVRLFITIIIGIIFGLIYWNKGDKTQKEQDLLNLLGAMYLSVIFLGASNTSSVQPVVAIERTVLYRERAAGMYSELPYAIGQVAIEVIYVAIQSLAYSIILYWMIGLPSQVDNFLWFYYFIFMSFMYFTLYGMMTVALTPNHQIAAIVMSFFISFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKNSPIEVPGFKPMTIKEYLEKRLGFQHDFLGVVALTHIAFSLLFLFVFAYGIRFLKFQKR. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04643 766 SMART AAA_5 202 394 IPR003593 GO:0016887
Seca8g04643 766 Pfam ABC-2 type transporter 490 702 IPR013525 GO:0016020|GO:0140359
Seca8g04643 766 Pfam ABC-2 type transporter 374 444 IPR043926 GO:0140359
Seca8g04643 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 401 IPR027417 -
Seca8g04643 766 Pfam Plant PDR ABC transporter associated 27 93 IPR013581 -
Seca8g04643 766 CDD ABCG_PDR_domain2 162 400 IPR034003 -
Seca8g04643 766 Pfam ABC transporter 193 344 IPR003439 GO:0005524
Seca8g04643 766 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 417 IPR003439 GO:0005524
Seca8g04643 766 Gene3D - 172 410 IPR027417 -
Seca8g04643 766 FunFam ABC transporter G family member 40 179 409 - -
Seca8g04643 766 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04643 Seca-Chr8 130715658 130725165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04643 190 377 Calmodulin-binding Proteins AT2G36910 27.228 8.23e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04643 K08711 - gmx:100788067 1339.32