Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04642 ATGGCAGCAGAAGTGACTGGAGAAGACATTGTGAGGTCAATGAGTGATGGAAGGAGGAGTTTTGGGGAGTGGTCCTCAGCAAGCTTGCATGATGCAGTTGGTGGACAGGGTGATGTGTTTCAAAGAAGTGGAAGGGAAATAGATGAAGAGGAGGAGCTGAAGTGGGAAGCTTTGGGGAGGCTTCCAACATATGATAGGTTGAGGAAAGGGATTCTGAAGCAAGTTCTAGAAAATGGGAGGGTTAACTATGAAGAGATTGACATCACCAAACTTGGAGTGCAGGAAAAGAAGTATATCCTTGAGAGCATACTGAAGACTGCTGAAGAAGATAATGAGAAATTTCTTCATAGGATGAGGGACAGAATAGATAGGGTTGGAATTGAAATTCCCAAGATTGAAGTCAGATTTGAGCATTTATCAGTTGAAGGGGATGCATATATTGGAACTAGGGCCTTACCAACACTACTTAATACTACCCTGAATGTAGTAGAGGGACTTCTTGGATATATCAAGCTTTTGCCATTTAAGAAAAAGGTTGTCAAGATTCTCAAAGATGTCAGTGGAATTGTGAAACCATCAAGAATGACTTTGCTTTTGGGACCTCCAGGATCAGGAAAAACTACACTCCTCCAGGCACTTGCTGGAAAAATGGACAAGGATCTAAGGGTATCAGGAAGAGTCACATACTGTGGTCATGAATTGTCAGAGTTTTTTCCCCAAAGAACATGTGCTTATATTAGTCAGCATGATCTTCATCATGGAGAAATGACAGTGAGAGAGACACTGGACTTCTCTGGACGCTGCTTGGGAGTTGGAGCAAGGTATGATCTGCTGGCAGAATTGTCAAGAAGAGAACTAGTAGCAGATATCAAACCAGATCCTGAAATTGATGCTTTCATGAAAGCCACAGCAGTGGAAGGTCAAGAAACAAGTCTTGTTACAGATTATATTCTCAAGATTCTTGGATTGGAAATATGTGCTGATATTTTGGTGGGAGATGAAATGAGAAGGGGCATATCTGGTGGACAAAAGAAGCGTTCAACTACTGGTGAGATGTTGGTAGGACCTGCAAAAGCCTTCTTCATGGATGAAATTTCAACTGGTTTGGATAGTTCCACTACCTTCCAAATCATCAGGTTTATGAGACAGATGGTCCATATCATGGATGTTACTATGATAATCTCTCTTCTGCAACCTGCACCAGAAACATATGACCTTTTTGATGACATAATATTACTTTCTGAAGGTAAGATTGTCTATCAAGGTCGCCGTGAGAGTGTTCTAGATTTTTTTGAAAGTGTAGGCTTCAAATGCCCAGAAAGGAAAGGAGTTGCAGACTTTTTACAGGAGGTAACTTCCAGAAAGGACCAAGAACAATACTGGTTCAGAAGGGACATACCTTACCAATATATTAGTGTGCCTGAGTTTGTAGCACACTTCAACAATTACTGCATTGGCCAACAACTTCATGAAGAGATTCAAGTTCCATTTGATTCTAATAAAACTCACCCTGCTGCATTGGTCAAGGAAAAGTATGGAATCTCCAAATGGGAACTCTTTAAGGCATGCTTTTCAAGAGAGTGGCTATTGATGAAGCGCAACTATTTTGTATATATATTTAAGATTTTTCAGATTATGATCACATCTATAATTACCATGACAGTATTTTTTAGAACAGAAATGAAGCATGGTCAACTTGAAGATGGAGGAAAATATTATGGTGCACTATTTTTCAGTCTCATTAATGTAATGTTCAATGGAGTGGCAGAGCTTGCAATGACTATTAATAGACTTCCTGTTTTCTTCAAGCAAAGAGATTTCTTGTTTTATCCATCATGGGCTTTTGCATTGCCCATCTGGGTCCTTAGATTTCCTCTCTCTCTATTGGAGTCAGGAATATGGATCATCCTCACCTATTATACTATTGGCTTTGCTCCTTCAGCTAGTAGGTTTTTTCGTCAATTATTGGCATTCTTCTGTGTGCATCAAATGGCTCTATCCCTTTTCCGCTTCATTGCTGCAATTGGAAGAACAAAAGTTGTGGCAAACACACTTGGTATCTTCACGATTTTAGTTGTTTTTGTCCTAAGTGGATTTACTATTTCAAGAGATGATATTGAGCCATGGATGATATGGTGCTATTATGCTTCACCTATGATGTATGGACAGACTGCAATAGCCATCAATGAGTTCCTAGACAAAAGATGGAGTGCTCCTAATAATGACCCAAGAATTCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAAGGCCAGAGGCATATTTACAGAAGACTATTGGTACTGGATATCTGTTGGTGCCCTTATAGGATTTTCTCTTCTTTTCAACATTTGTTTCATTCTTGCTCTAACTTATTTAAATCCATTTGTGAGCTCAAAATCTATTATAGTGGAAGAGGAAGACAGTAGGAAAAGCATGACTGCACCTTCCTCAGGGAAAAAACTGGCAACAGCAAATTCAGAGAAGAATTCAGCTTCAAATGCTAAATGGTTTGAAGGTATTGATCTGGAAGTAAGAAACACCACACATAGCCCAATTACAAAAGCTGCAGAGTTTTCAAAGTCCAAGAAGGGAATGGTGTTGCCCTTTCAGCCTCTGTCACTTGCTTTTGAAAATGTGAATTATTACATCGATATGCCAAATGAAATGAAGAAACAAGGAATTGAAGAGAATAGACTCCAACTACTAAAAGATATAAGTGGTGCTTTCAGGCCTGGAGTATTAACAGCATTAGTTGGTGTAAGTGGTGCTGGAAAAACCACCTTGATGGATGTGCTTGCAGGAAGGAAAACTGGTGGTTATATTGAGGGAAGCATCAACATATCCGGTTATCCAAAGAACCAATCAACTTTTGCTCGGATTAGTGGTTATTGTGAACAAAATGATATCCATTCTCCAAATGTTACAGTCTATGAATCCCTTATGTTTTCTGCTTGGTTGCGTCTCAGTAAGGAGGTTGATAAAGAAACACGAAAGATGTTTATTGAGGAAGTTATAGAGCTGGTTGAGCTACATTCAGTGAGGAATTTTATAGTAGGCCTTCCAGGAATAGACGGCTTATCAACTGAACAGAGAAAGAGGCTTACCATCGCTGTAGAGTTGGTTGCAAATCCTTCCATTATCTTTATGGATGAGCCAACAACTGGTCTTGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTTAGAAATACAGTAGATACAGGGAGAACTGTTGTCTGCACAATTCATCAACCAAGCATTGATATATTTGAACATTTTGATGAGCTGCTTTTGATGAAGAGAGGTGGACAAGTGATATATGGTGGTCCTCTTGGTCGAAATTCTGAGAAGCTTATAGGGTACTTTGAGGCTATTACAGGAATTCCTGAGATTAAAGATGGATATAATCCAGCCACATGGATGCTGGAGATCACTTCTCCCTTAGTTGAATCTCAGCTTGATATAGACTTTGCTGAATTATACACAAAGTCAGACCTTTACCAAAAGAACCAGGAACTTATTAAGGAACTATGCACACCAGTACCTGGGACAAAGGACCTTTACTTTCCATCTAAATACTCCCAATCCTTTGTTACTCAATGCAAAGCTTGCTTCTGGAAACAGTACTGCTCCTATTGGAGGAATCCACAGTATAATGCCGTCAGATTATTCATCACTATAATTATTGGCATCATTTTTGGACTTATTTATTGGAATAAAGGAGGTAAAACGCAAAAGGAACAAGACCTGTTGAATCTCCTTGGAGCTATGTATTTATCTGTTATTTTCCTTGGAGCCTCCAACACTAGCAGTGTGCAACCTGTTGTTGCAATAGAAAGAACAGTTCTCTACCGTGAAAGAGCTGCTGGAATGTACTCAGAACTGCCCTATGCAATTGGTCAGGTAGCAATTGAAGTAATTTATGTTGCAATCCAAAGTCTAGCCTATTCCATTATCCTCTACTGGATGATTGGGTTGCCATCACAAGTTGATAATTTCTTGTGGTTCTACTACTTCATATTCATGTCCTTCATGTACTTCACACTGTATGGAATGATGACTGTAGCTCTGACACCAAACCACCAAATTGCTGCAATTGTTATGTCTTTCTTCATCAGTTTCTGGAACCTGTTCTCTGGTTTTCTTATCCCAAGAACGCAAATTCCAATATGGTGGAGGTGGTACTATTGGGCATCCCCTGTGGCATGGACTATATATGGATTGGTGACATCACAGGTGGGTGACAAGAACAGTCCAATAGAAGTTCCTGGGTTTAAGCCAATGACAATAAAAGAGTACCTTGAGAAACGGTTGGGCTTTCAACATGACTTCCTTGGGGTTGTTGCTTTGACTCACATTGCTTTCAGCCTTCTCTTCCTTTTTGTATTTGCTTATGGCATCAGGTTCCTAAACTTCCAGAAAAGATAA 4428 0.3979 MAAEVTGEDIVRSMSDGRRSFGEWSSASLHDAVGGQGDVFQRSGREIDEEEELKWEALGRLPTYDRLRKGILKQVLENGRVNYEEIDITKLGVQEKKYILESILKTAEEDNEKFLHRMRDRIDRVGIEIPKIEVRFEHLSVEGDAYIGTRALPTLLNTTLNVVEGLLGYIKLLPFKKKVVKILKDVSGIVKPSRMTLLLGPPGSGKTTLLQALAGKMDKDLRVSGRVTYCGHELSEFFPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGARYDLLAELSRRELVADIKPDPEIDAFMKATAVEGQETSLVTDYILKILGLEICADILVGDEMRRGISGGQKKRSTTGEMLVGPAKAFFMDEISTGLDSSTTFQIIRFMRQMVHIMDVTMIISLLQPAPETYDLFDDIILLSEGKIVYQGRRESVLDFFESVGFKCPERKGVADFLQEVTSRKDQEQYWFRRDIPYQYISVPEFVAHFNNYCIGQQLHEEIQVPFDSNKTHPAALVKEKYGISKWELFKACFSREWLLMKRNYFVYIFKIFQIMITSIITMTVFFRTEMKHGQLEDGGKYYGALFFSLINVMFNGVAELAMTINRLPVFFKQRDFLFYPSWAFALPIWVLRFPLSLLESGIWIILTYYTIGFAPSASRFFRQLLAFFCVHQMALSLFRFIAAIGRTKVVANTLGIFTILVVFVLSGFTISRDDIEPWMIWCYYASPMMYGQTAIAINEFLDKRWSAPNNDPRIPEPTVGKAFLKARGIFTEDYWYWISVGALIGFSLLFNICFILALTYLNPFVSSKSIIVEEEDSRKSMTAPSSGKKLATANSEKNSASNAKWFEGIDLEVRNTTHSPITKAAEFSKSKKGMVLPFQPLSLAFENVNYYIDMPNEMKKQGIEENRLQLLKDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQSTFARISGYCEQNDIHSPNVTVYESLMFSAWLRLSKEVDKETRKMFIEEVIELVELHSVRNFIVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEHFDELLLMKRGGQVIYGGPLGRNSEKLIGYFEAITGIPEIKDGYNPATWMLEITSPLVESQLDIDFAELYTKSDLYQKNQELIKELCTPVPGTKDLYFPSKYSQSFVTQCKACFWKQYCSYWRNPQYNAVRLFITIIIGIIFGLIYWNKGGKTQKEQDLLNLLGAMYLSVIFLGASNTSSVQPVVAIERTVLYRERAAGMYSELPYAIGQVAIEVIYVAIQSLAYSIILYWMIGLPSQVDNFLWFYYFIFMSFMYFTLYGMMTVALTPNHQIAAIVMSFFISFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKNSPIEVPGFKPMTIKEYLEKRLGFQHDFLGVVALTHIAFSLLFLFVFAYGIRFLNFQKR. 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04642 1475 Gene3D - 173 467 IPR027417 -
Seca8g04642 1475 FunFam ABC transporter G family member 34 170 474 - -
Seca8g04642 1475 Pfam ABC-transporter N-terminal 107 157 IPR029481 -
Seca8g04642 1475 SMART AAA_5 911 1103 IPR003593 GO:0016887
Seca8g04642 1475 SMART AAA_5 192 417 IPR003593 GO:0016887
Seca8g04642 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 874 1126 IPR003439 GO:0005524
Seca8g04642 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 440 IPR027417 -
Seca8g04642 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1110 IPR027417 -
Seca8g04642 1475 Pfam Plant PDR ABC transporter associated 736 802 IPR013581 -
Seca8g04642 1475 Pfam ABC transporter 183 365 IPR003439 GO:0005524
Seca8g04642 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 440 IPR003439 GO:0005524
Seca8g04642 1475 FunFam ABC transporter G family member 40 888 1118 - -
Seca8g04642 1475 Gene3D - 883 1119 IPR027417 -
Seca8g04642 1475 Pfam ABC-2 type transporter 398 451 IPR043926 GO:0140359
Seca8g04642 1475 Pfam ABC-2 type transporter 1083 1153 IPR043926 GO:0140359
Seca8g04642 1475 Pfam ABC-2 type transporter 1199 1411 IPR013525 GO:0016020|GO:0140359
Seca8g04642 1475 Pfam ABC-2 type transporter 519 731 IPR013525 GO:0016020|GO:0140359
Seca8g04642 1475 CDD ABCG_PDR_domain2 871 1109 IPR034003 -
Seca8g04642 1475 Pfam ABC transporter 902 1053 IPR003439 GO:0005524
Seca8g04642 1475 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 33 1475 - -
Seca8g04642 1475 CDD ABCG_PDR_domain1 181 422 IPR034001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04642 Seca-Chr8 130559251 130569150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04642 899 1086 Calmodulin-binding Proteins AT2G36910 27.228 3.20e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04642 K08711 - gmx:100788067 2551.16