Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04635 ATGTTCTATCTATGCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTCCAAATGGCTCGTGATAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAACTGAAGCATCTAGAAGAATCAAAACTGAACTTCTAGTGCAAATGCAGGGTGTGGGACATAATGATCAGAAAGTTCTCCTTCTTGCAGCCACAAATACTCCTTATGCTCTGGATCAGGCCATTCGACGACGCTTTGACAAAAGGATATACATCCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAACCTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGTAAAACACGAGATGCTAAATTCTTCAGGAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTAAACGAGGAGCTGTTAATATTAGCCTGGAGGAACTTGATGCACAAGGCCTTGCTTCAAAGATTCTTCCACCACCCATCACCAGAGCAGATTTTGATAAAGTATTGGCCAGACAAAAGCCAACTGTTAGTAAAGCTGATCTTGAGGTGCATGAGAGATTCACCCAAGAGTTTGGAGAGGAGGGATGA 741 0.4022 MFYLCSVSSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQRGEGNETEASRRIKTELLVQMQGVGHNDQKVLLLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDISVCVKDVLFEPVRKTRDAKFFRKTSKGMWVPCEPTKRGAVNISLEELDAQGLASKILPPPITRADFDKVLARQKPTVSKADLEVHERFTQEFGEEG. 247
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04635 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 241 IPR027417 -
Seca8g04635 246 Pfam Vps4 C terminal oligomerisation domain 179 243 IPR015415 -
Seca8g04635 246 PANTHER AAA DOMAIN-CONTAINING 5 244 - -
Seca8g04635 246 ProSitePatterns AAA-protein family signature. 81 100 IPR003960 GO:0005524|GO:0016887
Seca8g04635 246 Gene3D - 4 234 IPR027417 -
Seca8g04635 246 Gene3D - 111 226 - -
Seca8g04635 246 FunFam vacuolar protein sorting-associated protein 4A 111 226 - -
Seca8g04635 246 Pfam ATPase family associated with various cellular activities (AAA) 3 109 IPR003959 GO:0005524|GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca8g04635 Seca-Chr8 130438161 130444937 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04635 6 167 Calmodulin-binding Proteins AT3G56690 35.366 7.32e-26 103
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04635 K12196 - csav:115706151 447.588