Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04606 ATGATTGGGAGCATTATTAGAGTTTACAAGACTTTCAATCAGGTTGAAATCAAACCTGAGATGATTAGCCACTACCTTGCTAGGGTTTCAATTTCATACAAACTTTTCAAGCATGGTAGGCATGCTATTGGTGCTACTCACTCATCTGTCTCATTCTTTTCATGTTTCAAATGA 174 0.3678 MIGSIIRVYKTFNQVEIKPEMISHYLARVSISYKLFKHGRHAIGATHSSVSFFSCFK. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04606 57 SUPERFAMILY Ribosomal protein S19 1 39 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca8g04606 57 Gene3D 30s Ribosomal Protein S19; Chain A 1 53 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca8g04606 57 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 1 54 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca8g04606 57 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 49 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca8g04606 57 Pfam Ribosomal protein S19 1 38 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04606 Seca-Chr8 129934102 129934311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g04606 1 49 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 78.431 1.44e-21 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04606 K02958 - twl:120013801 78.5666